rs240250116 SNP Detail

Summary

• ID
  rs240250116
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75368476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGTTAGG TCTAATTCCA
  TGTTTGTGCT GGACGCAGCT CCTTTAGCAG CATCCCCAAG CCCTGCTACA GCCGAATTAC
  GCTCATAGTA AGGACCACCA ACTAGTCCCC GCCCCCCAAC ACTTCCCCAC CCCCCCGCAC
  CCGCACACCC CCCCCCCCCA GCTAGCCCGG TAAGAAGCGC AGGCGCACGA GGGTTGGGCA
  M
  GTCGGGAACT AGGGGCGGGG CATTGAGCCC CGCCCATCTG CCCCGCCCAC TCGATCCACC
  CACTGATTTC GCCACCTTAG GCCAGTGGCC CCTAATTCTG CTGCGGGCAG CGCAGGATGC
  CCGGAGGCTG AAGTGGTGGA GCCGGGAGGA GTGGCTCCAC GTGTAGCTGT ACGGAAGGCT
  GTGGTGACAA TCGTTATTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391575948	MGP_WTSI_14_75530843	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240250116					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575948	MGP_WTSI_14_75530843	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75368476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	244 bp distal
Cpgi6737	CpG island 6737	58 bp proximal
Gm62951	predicted gene, 62951	415 bp upstream
Lcp1	lymphocyte cytosolic protein 1	94 bp upstream
Lrrc63	leucine rich repeat containing 63	155 bp upstream
Tssr4477	transcription start site region 4477	402 bp upstream
Tssr126606	transcription start site region 126606	71 bp upstream
Tssr126607	transcription start site region 126607	190 bp upstream
Tssr126608	transcription start site region 126608	237 bp upstream
Tssr126609	transcription start site region 126609	496 bp upstream
Tssr126610	transcription start site region 126610	548 bp upstream
Tssr126611	transcription start site region 126611	985 bp upstream
Tssr126612	transcription start site region 126612	1010 bp upstream
Tssr129761	transcription start site region 129761	431 bp upstream
Tssr129762	transcription start site region 129762	414 bp upstream
Tssr129763	transcription start site region 129763	387 bp upstream
Tssr129764	transcription start site region 129764	93 bp upstream
Tssr129765	transcription start site region 129765	within coordinates
Tssr129766	transcription start site region 129766	539 bp downstream
Tssr129767	transcription start site region 129767	581 bp downstream