rs240265887 SNP Detail

Summary

• ID
  rs240265887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48954786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTGCAC CTCAAGGGTC
  ATTTCCTTGG TGCAGAGCTG CGTTCTCCAG ACAGGACTTG AGGCAGCGTG GTCTGCCTGC
  TGGATCCCTG CCCAGCATTG TGTTGTAGTC TCTTCGGATG CACATGGGTG CTGCTCACTT
  GTGGTCTAGC TCATTTGGGG TTGGAAGGTG GGAACGTGCA GCCCCTCTTC TTATTTTTCC
  Y
  CTCACAGTGT GGTAGCTCCA TTTTAAGCTT GCAAGAAGCC TGCAGGCTTC AGACGCCTTT
  TCCCTCCCTC CATTTCCAAA TAGTAACTGC TGCTCCCTCC CAGGAAAGGT GAGACCAGCA
  GTGCTCTCCT TGCTGCTCCA GGTGGGCTGA TTTTTTTTTT TTTCCCATCT CAAGCAGGAA
  ATGGGATCCA AAGGTTTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371278771	MGP_WTSI_7_56560408	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240265887					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371278771	MGP_WTSI_7_56560408	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48954786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	245 bp distal
Nav2	neuron navigator 2	within coordinates
Rr167850	regulatory region 167850	within coordinates
Tssr66792	transcription start site region 66792	1150 bp downstream
Tssr66793	transcription start site region 66793	919 bp downstream
Tssr66794	transcription start site region 66794	760 bp downstream
Tssr66795	transcription start site region 66795	750 bp downstream