rs240272140 SNP Detail

Summary

• ID
  rs240272140
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGTTGA CTGGGGAATT
  GGCTTATGAA GAATATAGTA TGAGAAGTTC CATGAAAGTC TTGGAGAACC AGAGAGTAGG
  TAGCGCCGCT CAGGCTAATT TCAAAGAATG ACCCATGGTA GGGAAGGGGA GCTTAGATTA
  CAACCTACAG TTGGAGTCTG GAGGCCTGAA GGTGGCACTG GTCCAAGTCC TGGAGTCTAA
  W
  GCCTGGAGTT CTCATGGCCA ATGTCAACAG AAGAAGAGGT CAAAATGCCT CTTCTGTGGT
  AGAAGGAGAG TACATTCTCT CTAGTTCTAT GGTCTCCAGG TTCTTGAATG GTACTCACAC
  ACACTGAAGG TGAACATTCC CCATCAAATG TGCTCACACT CACTTCTCAG TCTCTTCTGG
  AAAGACCCTC GCAGGCAATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367532642	MGP_WTSI_6_17642328	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240272140					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367532642	MGP_WTSI_6_17642328	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1347 bp proximal
Gm55211	predicted gene, 55211	1098 bp upstream
Gm55212	predicted gene, 55212	1609 bp upstream
Rr626833	regulatory region 626833	within coordinates
Rr626834	regulatory region 626834	1249 bp proximal
St7	suppression of tumorigenicity 7	1252 bp upstream
Tssr55085	transcription start site region 55085	1279 bp upstream
Tssr55086	transcription start site region 55086	1577 bp upstream
Tssr55087	transcription start site region 55087	1637 bp upstream
Tssr55088	transcription start site region 55088	1677 bp upstream
Tssr55089	transcription start site region 55089	1723 bp upstream
Tssr55090	transcription start site region 55090	1842 bp upstream