rs240276003 SNP Detail

Summary

• ID
  rs240276003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7289211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCGTGTG CTCGTGCACG
  CGCGCACGCA CGCACGCGTA GGGAATGTAA GTAAAGCGTC TAGACAATAA GGACCTAAAA
  TGAAAGAGCC ATAAGCTACC TACTTACGTT TTTATTTCTC AGTTCTCCAA GTTCCAAATC
  ATCCGGCCCA CTAAGGTCCA AACTTGGAGG AAGCTCGAGT CTCTGCTTAT TAACACGTGT
  Y
  GCGGCACGGC TGACTTGTGC GTCACCAACC ACAAGGTGGC GAAAGAGATT ATCACATCAA
  ACCAGCCTGC CTTCTGCCTC TTCTATACCA TTATTTTGCT AAGCAGAAGC ATTTCCTGAG
  CGTGAGTCAT TCAATGAGCA CAGTGGTCCT ATGGATTGTG GCCCTATGGA TTAGCTATGA
  TTTCACAGAT GAGCAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403000287	MGP_WTSI_X_7000098	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240276003					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403000287	MGP_WTSI_X_7000098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7289211 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Cpgi22567	CpG island 22567	92 bp distal
DXImx8	DNA segment, Chr X, Immunex 8	1837 bp proximal
Rr689602	regulatory region 689602	1908 bp distal
Rr689603	regulatory region 689603	1458 bp distal
Rr689604	regulatory region 689604	1726 bp distal
Rr689605	regulatory region 689605	within coordinates
Rr689606	regulatory region 689606	25 bp proximal
Rr689607	regulatory region 689607	198 bp proximal
Rr689608	regulatory region 689608	315 bp proximal
Tssr162784	transcription start site region 162784	1887 bp upstream
Tssr162785	transcription start site region 162785	1851 bp upstream
Tssr162786	transcription start site region 162786	1840 bp upstream
Tssr162787	transcription start site region 162787	31 bp upstream
Tssr162788	transcription start site region 162788	within coordinates
Tssr162789	transcription start site region 162789	5 bp downstream