rs240280350 SNP Detail

Summary

• ID
  rs240280350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135808313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGAACTC ACGGAGTCCA
  GTCTCTGCCT CAGTACCGGC ATTAAAGATG TGCATCAAGC ATCGTTTTTC AGAGTGTGTG
  TGGTGTCATG TGCACATGAT TGTACAGAGG CCAGAGAAGG ACATCGGTGT CTTGGCCATC
  ACACACTAGA CCAGCGAGCG GTTCTCAACC TTGGGATCGA ATGACCCTTT CACAGGGGTC
  Y
  CGTAGCAAAT GTTTACATTA CGACTCATAA CCGTAACAGA ATTTCAGTTA CGAAGTAGCA
  ATTTTATTTT TAAAAGTAAT TTTATGGTTG AAGGGTTCAC CTCAACATGA GGAACTGTAT
  TAAAGGGTTG CAGCATTAGG AAGCTTAAGA ACCCCTGTTG TAGACTTTAT TTATTTATTT
  ATTTATTTAT TTATGAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366842222	MGP_WTSI_5_136255329	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240280350					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366842222	MGP_WTSI_5_136255329	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135808313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	112 bp distal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	Intron
Rr367967	regulatory region 367967	812 bp downstream
Rr622430	regulatory region 622430	1232 bp distal
Rr622431	regulatory region 622431	969 bp distal
Rr622432	regulatory region 622432	4 bp distal
Rr622433	regulatory region 622433	945 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	1074 bp upstream
Tssr49187	transcription start site region 49187	988 bp downstream
Tssr49188	transcription start site region 49188	814 bp downstream
Tssr49189	transcription start site region 49189	796 bp downstream
Tssr49190	transcription start site region 49190	770 bp downstream
Tssr49191	transcription start site region 49191	747 bp downstream
Tssr53761	transcription start site region 53761	1131 bp upstream
Tssr53762	transcription start site region 53762	1068 bp upstream