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rs240282331 SNP Detail
Summary
  • ID
    rs240282331
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr1:4877375 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      acacactca ggaggtagag ttaggagttt
    gaggcctgcc tggtctgcaa tgtgagttcc aggacaacca aggctacaca gagaaaccat
    gtatcgaaaa agcaaaaAAT ATATAGAGGC ATAAGCCTTG TGAATCACAT TACTACCATT
    K
    TGGGGGAGGG TTATCAATTT AACATTTTTG AGAATGTTTA AACTTTTCAA TATTTAAGGG
    CAAGACTGAT TTAAAACCGT TTTGAATAAG ACTCCAAAAT CTCTCAGGAC CTAGATTTTC
    CTGTGTAATT TAATTAAGTC TTTTAGTCTT                                 
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss319612492 CHEV_1_4797233 CHEVERUD SCREENING_POP f SNP G T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs240282331 SNP G T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:4877375 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9 CpG island 9 289 bp proximal
Gm37988 predicted gene, 37988 740 bp upstream
Gm70766 predicted gene, 70766 112 bp downstream
Lypla1 lysophospholipase 1 671 bp upstream
Rr407434 regulatory region 407434 123 bp proximal
Rr407435 regulatory region 407435 568 bp proximal
Rr407436 regulatory region 407436 943 bp proximal
Tssr5801 transcription start site region 5801 490 bp upstream
Tssr5802 transcription start site region 5802 714 bp upstream
Tssr5803 transcription start site region 5803 1094 bp upstream
Tssr10888 transcription start site region 10888 508 bp downstream
Tssr10889 transcription start site region 10889 566 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory