rs240288475 SNP Detail

Summary

• ID
  rs240288475
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133989782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGTCTG GATTCTTCTA
  TCCGCCAAAC CCACAACAGA ATTAACCAGA GAAACTTTTA TCCCATGGCA AAACAATTGA
  TAAGCTTCGT AACACCTACT GTAATGAGGC ATGCAGGTAA TATGTCTTTT CCTGGGGACC
  CCTTCCAATC TTGATCATTA AGTTGTAATC TTCCAGCCAG ATGTGGTAGT GTGTTCTTGT
  W
  GCACTAGCAC TTAGTTGGCT GAGGCAGGAG GACCAGGAAT GAGTCTTTGT CCCCCTCTGC
  ACAAAGTAGC CCTTCCTCTA CTTTTGCCAA GAAAGTGGTG GCTCAGCCGG GAGTGGTGGC
  ACACAAGCCT TAAATCCTAG CCCCCAGGAG GCAGAAACAA GCAGATCTCT GTGAGGTTTG
  AAGCCAGGCT GTCCTACGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351510355	MGP_WTSI_1_135958621	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240288475					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351510355	MGP_WTSI_1_135958621	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133989782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	605 bp distal
Cpgi759	CpG island 759	1083 bp proximal
Gm19497	predicted gene, 19497	1097 bp upstream
Gm57140	predicted gene, 57140	308 bp downstream
Rr1740	regulatory region 1740	within coordinates
Rr12446	regulatory region 12446	1982 bp distal
Tssr8846	transcription start site region 8846	954 bp downstream
Tssr8847	transcription start site region 8847	937 bp downstream
Tssr8848	transcription start site region 8848	894 bp downstream
Tssr8849	transcription start site region 8849	1409 bp upstream
Tssr8850	transcription start site region 8850	1476 bp upstream
Tssr13763	transcription start site region 13763	1229 bp upstream
Tssr13764	transcription start site region 13764	1171 bp upstream
Tssr13765	transcription start site region 13765	1085 bp upstream
Tssr13766	transcription start site region 13766	1238 bp downstream
Tssr13767	transcription start site region 13767	1271 bp downstream
Tssr13768	transcription start site region 13768	1311 bp downstream
Tssr13769	transcription start site region 13769	1322 bp downstream