rs240300227 SNP Detail

Summary

• ID
  rs240300227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69344238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTATGAG TCAGCCTATC
  CCACGCACCC CCTACGCATT GTCTTTGGAG TGAGCGGAGC GAGGTTCTGT TATTGTGGGT
  CGCGTAGCGG GTGACTGTGG CCCGAGGTAC GGAAAAGGGT GGGGGCGAGG GTGTGTGAGA
  ATCACTCATA TACCTTTGGG CCCGGTCGCC CGGAGCTGGG GCCATTTAGC CGACAGACAC
  Y
  ATATTCAACA ATATTGTCAC TGTGTGAACC AAGGCCACAG GAATCGCTTG CTCAACCTCC
  CCGAAGGTGT AACGGTGTCA TCAACACCTG TGCAGATGCC CCCACCTATC TATTGTTTGA
  ACGCAGGGCC ATTTTTCTTA ACTGGTCTCA GCTGAGAAAG GATTGCTCCT CAGTAGGCCT
  TACTGCGGAT TTTAAAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386384135	MGP_WTSI_12_70398451	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240300227					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386384135	MGP_WTSI_12_70398451	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69344238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4692	CpG island 4692	within coordinates
Klhdc2	kelch domain containing 2	within coordinates
Rr467020	regulatory region 467020	732 bp distal
Rr467021	regulatory region 467021	within coordinates
Rr467022	regulatory region 467022	1765 bp proximal
Tssr113629	transcription start site region 113629	1472 bp downstream
Tssr113630	transcription start site region 113630	666 bp downstream
Tssr113631	transcription start site region 113631	560 bp downstream
Tssr113632	transcription start site region 113632	531 bp downstream
Tssr113633	transcription start site region 113633	521 bp downstream
Tssr113634	transcription start site region 113634	493 bp downstream
Tssr113635	transcription start site region 113635	474 bp downstream
Tssr113636	transcription start site region 113636	18 bp downstream
Tssr116496	transcription start site region 116496	219 bp upstream