TCCCTGTGT CTGCATGTGC AGTATGGACC TGTGTCCAGC CCCGTGGCTC CTGCCTCGTG GTTTCTGCCC CGTGGCTCCT GCCCCGAGGC TCCTGCTCCA TGGCTCCTGC CCCGTGGCTC CTTCCCTGTG GCTCCTGCCC CGTGGCTCCT R CCCCGTGGCT TGTTGAATAA ACATAAGCCA CTCAGTGTTC CCAGCTCGGC ACCCATTACG TTTGAAAGGC CGTGGGATGT CCTCATCAGG GATGCCCTTT TTGGTCCCAT CTGGAGCAGG TGACCCTTTG GGTCCATCAA TAGTGGGGAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | LG/J |
SM/J |
---|---|---|---|---|---|---|---|
ss321318831 | CHEV_4_130373206 | CHEVERUD | SCREENING_POP | f | SNP | A | G |
SNP Consensus Information | |||||||
SNP | Consensus Type | LG/J |
SM/J |
||||
rs240301191 | SNP | A | G |
Location: Chr4:130544602 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Sdc3 | syndecan 3 | within coordinates | ||||||
Tssr39263 | transcription start site region 39263 | 438 bp downstream | ||||||
Tssr39264 | transcription start site region 39264 | 380 bp downstream | ||||||
Tssr39265 | transcription start site region 39265 | 1300 bp upstream | ||||||
Tssr39266 | transcription start site region 39266 | 1322 bp upstream | ||||||
Tssr39267 | transcription start site region 39267 | 1340 bp upstream | ||||||
Tssr39268 | transcription start site region 39268 | 1364 bp upstream | ||||||
Tssr39269 | transcription start site region 39269 | 1411 bp upstream | ||||||
Tssr39270 | transcription start site region 39270 | 1436 bp upstream | ||||||
Tssr39271 | transcription start site region 39271 | 1475 bp upstream | ||||||
Tssr39272 | transcription start site region 39272 | 1497 bp upstream | ||||||
Tssr39273 | transcription start site region 39273 | 1557 bp upstream | ||||||
Tssr39274 | transcription start site region 39274 | 1599 bp upstream | ||||||
Tssr39275 | transcription start site region 39275 | 1615 bp upstream | ||||||
Tssr39276 | transcription start site region 39276 | 1651 bp upstream | ||||||
Tssr39277 | transcription start site region 39277 | 1667 bp upstream | ||||||
Tssr39278 | transcription start site region 39278 | 1680 bp upstream | ||||||
Tssr43599 | transcription start site region 43599 | 1398 bp downstream | ||||||
Tssr43600 | transcription start site region 43600 | 1421 bp downstream | ||||||
Tssr43601 | transcription start site region 43601 | 1478 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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