rs240301804 SNP Detail

Summary

• ID
  rs240301804
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8055488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATATGGGC TTTCCTATAG
  ATGCTTTTTG TTGTTGTTTG GGTTTGTTTG TTTGTTTTGC TACTTAGAAG TCATTTCATT
  CTTTCAACTG ATGAAAATAT TTATTAAGCA TATGCTAAGT AGTTAATAAT CTGTTGATAA
  TAATAATAAA GCAGCTATAT ATCTGAGTAA TTATAGTTAT GTTAAGAAAC ACTGTGATAT
  W
  GTATATACAC TACAGTAGGA GATGCAGTAG AAACATTTGA CAAGGGAATC CAAGGCAGTC
  TGCAGCAACC AAGGAAGGAT AACTGGAAGA ATGCCTTTGA CATCAAATTT CATGGATATA
  TTATAAATGT CACTGTTACA CAATTGATCC AGCTGTGCAT AAGGTTCCTA CTGAAAGACT
  TTCAACAGGA ATGCTGTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064647	MGP_WTSI_12_8012294	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240301804					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064647	MGP_WTSI_12_8012294	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8055488 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr112626	transcription start site region 112626	570 bp downstream
Tssr112627	transcription start site region 112627	500 bp downstream
Tssr112628	transcription start site region 112628	593 bp upstream
Tssr112629	transcription start site region 112629	757 bp upstream
Tssr112630	transcription start site region 112630	896 bp upstream
Tssr112631	transcription start site region 112631	1129 bp upstream
Tssr112632	transcription start site region 112632	1163 bp upstream
Tssr112633	transcription start site region 112633	1228 bp upstream
Tssr112634	transcription start site region 112634	1379 bp upstream
Tssr112635	transcription start site region 112635	1470 bp upstream
Tssr112636	transcription start site region 112636	1941 bp upstream