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rs240302476 SNP Detail
Summary
  • ID
    rs240302476
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrX:9302888 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAACAAGAGC ATAGCAGGAA
CATAAGGAGA ATCTGAGCTC TCCCTTCGTC TAGTCCCTTC AAAATCTTCA TACAATAGCA
AAATTTGTGA TCAGAACTAA AACTATGCAA TGCAATATGA AGTCAAAACA AGATGAGCGC
ATGCGTCCTT TAGTTACATG TGATACATAT CAAGTAGCAA TGGAGGCCGA ATCCTAACCA
Y
CATGAGACCC TTTGCCTCTG ACACTTCCCT TGTGAGTGTG GTGCTTTCCT TTCTCTCCTG
TTGGCTTCAC CACTTTCTCT CCATCAAGGC CTCTGCTCTC TACTCTTCCT TCCTCATTAC
CAAAGCTGAA TAGTTATAAG TCTTTGTATT CCTGGGGGGG GGGGGGCAGT CAGAAATGCT
TTTAGTTCCC AGAAAGAGGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss403025256 MGP_WTSI_X_9013775 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240302476 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss403025256 MGP_WTSI_X_9013775 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:9302888 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cybb cytochrome b-245, beta polypeptide within coordinates
Tssr160517 transcription start site region 160517 1150 bp downstream
Tssr160518 transcription start site region 160518 648 bp downstream
Tssr160519 transcription start site region 160519 4 bp downstream
Tssr160520 transcription start site region 160520 5 bp upstream
Tssr160521 transcription start site region 160521 92 bp upstream
Tssr160522 transcription start site region 160522 223 bp upstream
Tssr162873 transcription start site region 162873 1001 bp upstream
Tssr162874 transcription start site region 162874 745 bp upstream
Tssr162875 transcription start site region 162875 722 bp upstream
Tssr162876 transcription start site region 162876 566 bp upstream
Tssr162877 transcription start site region 162877 547 bp upstream
Tssr162878 transcription start site region 162878 495 bp upstream
Tssr162879 transcription start site region 162879 389 bp upstream
Tssr162880 transcription start site region 162880 303 bp upstream
Tssr162881 transcription start site region 162881 285 bp upstream
Tssr162882 transcription start site region 162882 12 bp downstream
Tssr162883 transcription start site region 162883 392 bp downstream
Tssr162884 transcription start site region 162884 434 bp downstream
Tssr162885 transcription start site region 162885 478 bp downstream
Tssr162886 transcription start site region 162886 525 bp downstream
Tssr162887 transcription start site region 162887 552 bp downstream
Tssr162888 transcription start site region 162888 605 bp downstream
Tssr162889 transcription start site region 162889 635 bp downstream
Tssr162890 transcription start site region 162890 695 bp downstream
Tssr162891 transcription start site region 162891 729 bp downstream
Tssr162892 transcription start site region 162892 782 bp downstream
Tssr162893 transcription start site region 162893 886 bp downstream
Tssr162894 transcription start site region 162894 916 bp downstream
Tssr162895 transcription start site region 162895 976 bp downstream
Tssr162896 transcription start site region 162896 1002 bp downstream
Tssr162897 transcription start site region 162897 1029 bp downstream
Tssr162898 transcription start site region 162898 1053 bp downstream
Tssr162899 transcription start site region 162899 1199 bp downstream
Tssr162900 transcription start site region 162900 1209 bp downstream
Tssr162901 transcription start site region 162901 1240 bp downstream
Tssr162902 transcription start site region 162902 1322 bp downstream
Tssr162903 transcription start site region 162903 1383 bp downstream
Tssr162904 transcription start site region 162904 1484 bp downstream
Tssr162905 transcription start site region 162905 1568 bp downstream
Tssr162906 transcription start site region 162906 1572 bp downstream
Tssr162907 transcription start site region 162907 1645 bp downstream
Tssr162908 transcription start site region 162908 1669 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory