rs240304205 SNP Detail

Summary

• ID
  rs240304205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:63968607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGTGC ATATGCAACC
  TGTCTCCTAG CATGATGAGA CTTAAGAGTC AAAACAGAAT TGTCCTAGAA GAAGCTGAAA
  TACTGCCGGG CAGTGGTGGC ACACGCCTTT AATCCCCGCA CTAGGGAGGC AGAGGCAGGC
  AGATTTCTGA GTTCAAGGCC AGCCTGGTCT ACAAAGTGAG TTCCAGGACT GCCAGGGCTA
  Y
  ACAGAGAAAC CAACCCTGTC TCGAACCCCC CCCCCCAAAA AAAAGAAGCT GAAATACCAA
  ACAGAAAAGT AGAAAGAAAG GTTGCCCTGA GGAATCTGTA TACAAAGAAG AAGCGTCCGT
  ACAGACAGAT AGTCCAGCAC TGAGATGAGC CCTCTAAGAA TGAGTACCGA GTGTCTGCAT
  CGAGGAATAC TCACAATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383649242	MGP_WTSI_11_63891283	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240304205					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383649242	MGP_WTSI_11_63891283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:63968607 () rs orientation: forward

Symbol	Name	Function Class
2810001G20Rik	RIKEN cDNA 2810001G20 gene	1703 bp upstream
Cox10	heme A:farnesyltransferase cytochrome c oxidase assembly factor 10	within coordinates
Cpgi3048	CpG island 3048	1376 bp proximal
Gm71991	predicted gene, 71991	1752 bp downstream
Rr246948	regulatory region 246948	593 bp proximal
Tssr102116	transcription start site region 102116	1697 bp upstream
Tssr102117	transcription start site region 102117	1766 bp upstream
Tssr102118	transcription start site region 102118	1832 bp upstream
Tssr108456	transcription start site region 108456	1663 bp downstream