rs240305054 SNP Detail

Summary

• ID
  rs240305054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30814325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTTAAT GATTCCCAGG
  TTGACCTGTT GGGCTGGGGC GGAACCTAGG GACAGGAACA AGGAGGCATG GCCTGGGGGA
  GCCTGGCCTG GCTCTATCCT GGCGCCCCCA GTCCCAGGCT CCCATCCAGG GAGCAGCCGA
  CCGTGGGCTG GGGCCAGAGC ATGCAAAGAC AGAGGTTGGG CCGGGGGTCA ATAATGACAA
  K
  GTGTGACCAG CCACCAGGGG GACACCTGGA GTGGCAGGTC AGAACACCGG GCGGGCGAGG
  TTGAACTTCC AGGGGACTTG AGGGTTTTGA GGGAGGAGAA CTTGGGGGAG TCCTCAGATT
  TCTGAGTTAG CAGTGAAAGC AGGCTGGAGT AGTCTGGGGG TTTCTGGGAT CTCTTACACG
  GGCTGCTGAA CATCAGACTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139436	CHEV_7_31899919	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240305054					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30814325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	1035 bp proximal
Hpn	hepsin	within coordinates
Scn1b	sodium channel, voltage-gated, type I, beta	1624 bp downstream
Tssr71932	transcription start site region 71932	184 bp upstream
Tssr71933	transcription start site region 71933	327 bp downstream
Tssr71934	transcription start site region 71934	1992 bp downstream