rs240306577 SNP Detail

Summary

• ID
  rs240306577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69540422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAATTGGG CTGGAGAGGT
  GGCTCAGCGG TTAAGAGCAC TGGCTGATCT TCCTGAGTTC AAATCCCAGA ACCCACATGT
  GGCTCACAAC CATCATGATG GGATCCGAAG TCCTCTTCTG GTGTGTCTAA AGACAGTAAC
  AGTGTGCTCA CATACATACA AATAAATAAA TCTTTAAAAA CAAAACAACA ACATAGTAAT
  Y
  TTGTGAATGA GGCAAAGATC CATGCTTCCC AAACTGATAA GTTATAAACC TTACCGAAGG
  CCAGTCTAGA CATCCTCTTG TGTATTTATC AACAAATCTA TGGGGAACTA ACACAAAGAA
  GTTTTTCAGT ATGTTGCTCC GTCATAGCAA AGTTCTTGTT TTCCTCTTCT GTTCTTATAT
  TGTAAAGAGA ACAACAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375079509	MGP_WTSI_8_71611669	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240306577					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375079509	MGP_WTSI_8_71611669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69540422 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	966 bp upstream
Cpgi20406	CpG island 20406	733 bp proximal
Rr400869	regulatory region 400869	716 bp upstream
Rr664484	regulatory region 664484	386 bp proximal
Rr664485	regulatory region 664485	1442 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	within coordinates
Tssr77656	transcription start site region 77656	946 bp upstream
Tssr77657	transcription start site region 77657	963 bp upstream
Tssr77658	transcription start site region 77658	983 bp upstream
Tssr81518	transcription start site region 81518	1430 bp downstream