rs240311164 SNP Detail

Summary

• ID
  rs240311164
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32609817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAATTTA AAAAAAAAAA
  AAAAAAGAAA AAAGAAAAAG TTTCCAAGCC ACTGACCTTC AGCACAACAA AGCAACAAAA
  TTTCATTTGG TCCAAGAAAT TAAGAGTCTT CTGCCATTCA CTATGATATA TATATATATA
  TATATATATA TATATATATA TATATATATC ACTATATATA TTTCACTATA TATATACACA
  Y
  ACACACACAC ACACACATAT ATATATCTCA CTACACTTTC TTAGACAAAA TAAAGAGCAA
  TGATTTGTTG ATTATTATAA CTTTTTGAAG TATTTTTTTC TGGACTGTAC TGCATTTATG
  TAAATATGCC CATACCTCGG ATGAGAATCC AGAGGCACCA ACACGTTAAG ACAATTAGGC
  AAAATTCTGC ACGGAGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SM/J	ZALENDE/EiJ
ss377132798	MGP_WTSI_9_32506106	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SM/J	ZALENDE/EiJ
rs240311164					SNP	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377132798	MGP_WTSI_9_32506106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32609817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	1977 bp distal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr206170	regulatory region 206170	216 bp distal
Tssr84276	transcription start site region 84276	1645 bp downstream
Tssr84277	transcription start site region 84277	1510 bp downstream
Tssr84278	transcription start site region 84278	582 bp downstream
Tssr84279	transcription start site region 84279	247 bp downstream
Tssr84280	transcription start site region 84280	889 bp upstream
Tssr84281	transcription start site region 84281	1290 bp upstream
Tssr84282	transcription start site region 84282	1369 bp upstream
Tssr84283	transcription start site region 84283	1749 bp upstream