rs240313006 SNP Detail

Summary

• ID
  rs240313006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75369986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATATGTAA CCTCAGCAGT
  TGTCAGTATT TTGTTTTCTA TAACTATTGC TGTAACTATA GTTCCAACCA TTTAGAGAAA
  TGAAATAGTA ATGAAAATTA AATCCCTGGT TTGATAAGTC TTCTACGCCC ATGTCAGCTA
  TTCTACCATA CCTTACACAT TTTCCATGGG AATGACAGAA GCATGGGATA AAATTGTGAA
  R
  GCCTACATTC CACTCAGTTC TGATTACTTT AGCACTTCTT GTATTTAATT TGTTATTTTT
  GAAAGTACGG CTACCTCACC TTCTCCTTCC TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT
  CCTTCCTTCC TCCTCCTCCT CCTCCTTGTC TTCCTTCATC CTGTTTATCT CTTGGAAGGG
  AGGGTGTTCC CGCTTTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391575965	MGP_WTSI_14_75532353	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240313006					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575965	MGP_WTSI_14_75532353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75369986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	1754 bp distal
Cpgi6737	CpG island 6737	1286 bp distal
Gm62951	predicted gene, 62951	1925 bp upstream
Lcp1	lymphocyte cytosolic protein 1	within coordinates
Lrrc63	leucine rich repeat containing 63	1665 bp upstream
Rr297500	regulatory region 297500	385 bp distal
Tssr4477	transcription start site region 4477	1912 bp upstream
Tssr126606	transcription start site region 126606	1396 bp downstream
Tssr126607	transcription start site region 126607	1305 bp downstream
Tssr126608	transcription start site region 126608	1268 bp downstream
Tssr126609	transcription start site region 126609	983 bp downstream
Tssr126610	transcription start site region 126610	939 bp downstream
Tssr126611	transcription start site region 126611	508 bp downstream
Tssr126612	transcription start site region 126612	492 bp downstream
Tssr129761	transcription start site region 129761	1941 bp upstream
Tssr129762	transcription start site region 129762	1924 bp upstream
Tssr129763	transcription start site region 129763	1897 bp upstream
Tssr129764	transcription start site region 129764	1603 bp upstream
Tssr129765	transcription start site region 129765	1500 bp upstream
Tssr129766	transcription start site region 129766	964 bp upstream
Tssr129767	transcription start site region 129767	912 bp upstream