rs240313011 SNP Detail

Summary

• ID
  rs240313011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163445360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAGCACA GTGCCTGACA
  GGTACAGGAG GCCATCAGTA ATTCTTTGAT AAATGACTGG GTGGGAACTG ACCCAGAAGA
  GTTCCTTGTA GACACCTGTG ACACTAAGTA AAAGTTTCTA AAGACGAATA GGAACCCAGG
  GCTGTAGAAA CCTGGAGGAA CTCACCCTGA GGAAGGGGGC GGGGGGGGGG GGGGATGGAG
  Y
  GGGGATTTAC AGACTAGATC CCATCGCAGT TGGGCCTTGG CAGCTAACAT GGAGAGAAGC
  CTTCATGCAG AGAGTGTCAG ATGTGTGAGA TAGTCTAAGA ATGTGGATTA TTAGTTTGTC
  CTCCCTGGTA AATGGAGGAG AGAAAGGAGA GGGCCTTTGG GGCTAGTTCT ATAGTCTGTG
  GCACCGCGGT CAATCTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356411397	MGP_WTSI_2_163429176	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240313011					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	T	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356411397	MGP_WTSI_2_163429176	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163445360 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12638	CpG island 12638			441 bp distal
Rr397464	regulatory region 397464			600 bp downstream
Rr569434	regulatory region 569434			1108 bp distal
Rr569435	regulatory region 569435			1407 bp distal
Rr569436	regulatory region 569436			1211 bp distal
Rr569437	regulatory region 569437			137 bp distal
Tssr21475	transcription start site region 21475			1131 bp downstream
Tssr21476	transcription start site region 21476			1081 bp downstream
Ttpal	tocopherol (alpha) transfer protein-like			Intron
				Noncoding-Transcript-Variant