rs240314453 SNP Detail

Summary

• ID
  rs240314453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106769785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTGGATT GCCGAGCCAA
  TCAAGGGGAA CGTCCACTTT GATTCGCCGG CTTGCTCAGA CCCCGCTTTA ACCTGGGTCA
  GACGGCAGAA CCTCTTAAAC GAAAGGTCTC GGCCTGCCTA GTCGTTTCCC GTCCTGGGCC
  TCTGAGGACC TCGCGGCAAG GCTGCGAGCA GAGGCGTTGG TCTACCTTCC AAATGGAGGC
  Y
  ATGGGATCTT GGGAGGTTTT GTTCTCCACT CTTGGAGACA CGAGGATGGG AACTGGAGAC
  ATTACCGCCT GGACTGCCCT AATGCTAAGT GCAAGGGCTT TGGCCACTCG CCCTGGAAGG
  CGGAATATGG AGAGCGGCCG ACTAAGTGCA GAAAAGTATC TGGAGCTAAA AGGGCTTGGA
  GCCCGGCGAC AAGGGTTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378838676	MGP_WTSI_9_106794917	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240314453					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378838676	MGP_WTSI_9_106794917	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106769785 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	within coordinates
Dock3	dedicator of cyto-kinesis 3	239 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	648 bp upstream
Rr368849	regulatory region 368849	385 bp downstream
Rr686409	regulatory region 686409	1182 bp distal
Rr686410	regulatory region 686410	1065 bp distal
Rr686411	regulatory region 686411	778 bp distal
Rr686412	regulatory region 686412	610 bp distal
Rr686413	regulatory region 686413	362 bp distal
Rr686414	regulatory region 686414	within coordinates
Rr686415	regulatory region 686415	848 bp proximal
Tssr86943	transcription start site region 86943	463 bp downstream
Tssr86944	transcription start site region 86944	111 bp downstream
Tssr86945	transcription start site region 86945	99 bp downstream
Tssr91353	transcription start site region 91353	1213 bp upstream
Tssr91354	transcription start site region 91354	1195 bp upstream
Tssr91355	transcription start site region 91355	1189 bp upstream
Tssr91356	transcription start site region 91356	1148 bp upstream
Tssr91357	transcription start site region 91357	666 bp upstream
Tssr91358	transcription start site region 91358	639 bp upstream
Tssr91359	transcription start site region 91359	616 bp upstream