rs240315646 SNP Detail

Summary

• ID
  rs240315646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63070852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGTTGCA CAGGAAGCCT
  AGTGCTGGAG ACACAGTCCT TGAGAGGCTC ATGAGACATC TGCTGAGGAC AGCCATGAAC
  CTGAGGCTCA GAAGCAAGGT CCTAGCTGAG GGTCCCAGGA CAAGATGGGG GTACCAGGGA
  GCCTGGTCAT TCCTGTGCCC CCCACTCACC GCCATCGAGT ACTGGTCATG CTGATCTCTG
  Y
  TTCTGTCGCC CCCTCCTGCA GCACCAGCGT GCTCACGCTC ATCTTGTCCT TAATGCGGCT
  CAGCCACGGG CAGGTGGATC CCACCGCCAG GTTGTACCAT TTTCCATAGA TCTAGGAAGA
  GCCACAAATC TGGATTTAAC CAAGCCCTTG AGGAGATGTG TCCACATTTC CCCTCCTTCC
  TCCAAGGACC AGCCCTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361729066	MGP_WTSI_4_62813649	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240315646					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361729066	MGP_WTSI_4_62813649	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63070852 () rs orientation: forward

Symbol	Name	Function Class
Ambp	alpha 1 microglobulin/bikunin precursor	within coordinates
Rr593477	regulatory region 593477	1275 bp distal
Rr593478	regulatory region 593478	1548 bp proximal
Tssr37529	transcription start site region 37529	1132 bp downstream
Tssr37530	transcription start site region 37530	23 bp downstream
Tssr37531	transcription start site region 37531	26 bp upstream
Tssr42025	transcription start site region 42025	2 bp downstream
Tssr42026	transcription start site region 42026	31 bp downstream
Tssr42027	transcription start site region 42027	56 bp downstream
Tssr42028	transcription start site region 42028	75 bp downstream
Tssr42029	transcription start site region 42029	1515 bp downstream
Tssr42030	transcription start site region 42030	1665 bp downstream