rs240317199 SNP Detail

Summary

• ID
  rs240317199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184268473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATACTTT AATGTCTGAC
  TATATACTCT GTGAAGCAGG GACCGCCCCT TACCCCAGAC ACTCCTTGAA GTACAAGCTG
  ACTCCATGAG TGGTTAAGGT AGGCTTTGGA AAATATTCTG TTGAATTCAG TCACTGGAAA
  TGCCTTGGTC TGAAGGACAA AGCAGTGTCA GATATGAATG GTTTAAAACA GAAATATCAT
  R
  GACCACCAAC ATGACAGAAG CCTTGCGCTC AGCTATCACA TAGCCCTGCC AGCAGAGGCT
  TACTCAACGA CCCACCGTCC ATTACTTCTT TTCAACAAGC CACTCTCGTA ACATTCTTTG
  AGGTTGTATG CCCCCACTGA AGTGAATAAT GACATAGTTT ATGGTAAAGG GTGAACTGAA
  AAACAGCAGT GTCATTATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320167607	CHEV_1_186360155	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240317199					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184268473 () rs orientation: forward

Symbol	Name	Function Class
1700112H15Rik	RIKEN cDNA 1700112H15 gene	within coordinates
Gm70799	predicted gene, 70799	within coordinates
Rr425237	regulatory region 425237	241 bp distal
Rr425238	regulatory region 425238	218 bp proximal
Tssr10585	transcription start site region 10585	491 bp upstream