rs240321643 SNP Detail

Summary

• ID
  rs240321643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79750622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATTGTG CAGTTTGTGG
  ATGAGACAAA GCCGGAGCTA CCTCACACAG TTACAAAATA AATGCTCATT CCATCCCGGT
  TTGCCTTTGT TGTTAGGCAA TCTCTCCTAA TTTGCACTCC CAACTCTCAT TCCCCCTTTT
  TAAAGTTGAG ACAGCTTATT CCGAAGTTGC CTAGACTGGC TTAACGCTCA CTCCACAGCC
  Y
  AAGTAGACTC TGTGATCCTC CTGCCTCAGC CTCCCATGTA GCTGGAATCA TGAGCTTAGA
  CAAATGTAAA CAATTAATGT GTGCTACTGT AATGTGAACT AAATGCCTTT GTGGCTTGCT
  GGCACATTTC AGTAGACAAG GGAGGTGGCT TTATACAAAT CCATACACTG GAGTTGCGGA
  AAATAAAGCT TGGCCCGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358591996	MGP_WTSI_3_79647237	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240321643					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358591996	MGP_WTSI_3_79647237	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79750622 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13278	CpG island 13278			363 bp distal
Gm64378	predicted gene, 64378			121 bp downstream
Rr397727	regulatory region 397727			793 bp downstream
Rr578586	regulatory region 578586			1597 bp distal
Rr578587	regulatory region 578587			1096 bp distal
Rr578588	regulatory region 578588			540 bp distal
Rr578589	regulatory region 578589			within coordinates
Rr578590	regulatory region 578590			752 bp proximal
Tmem144	transmembrane protein 144			Intron
				Noncoding-Transcript-Variant
Tssr29591	transcription start site region 29591			530 bp downstream
Tssr33748	transcription start site region 33748			631 bp upstream
Tssr33749	transcription start site region 33749			383 bp upstream
Tssr33750	transcription start site region 33750			121 bp downstream