rs240334265 SNP Detail

Summary

• ID
  rs240334265
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148989356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGCCCCG CACGGCCGCC
  CCCGGCCCAC CCGCGGCCGC CCTCGCCCGC AGCGGCGCCC CGCCCGCCGC CCCGCGCTCC
  CCGCCGCGGC CGCCCATACA GCGGGGAAGC GCCGCTGCCC GCCGGCTCGC TCGCTCCGCG
  CACGCCGCCT GCCCGAAACG CTCGGCCCTG GGGGCCACAA ACACGTTTTG GGGAAAAAAA
  W
  TTTTTTTTAA ATAATCCGGA ACACGAACAC ACACACAGGC AGACACAAAA CAAAAAAAAA
  ATTTTTTTTT TTTTGCGCCA GTGAAGCGCG GACGGCGCCG CGGGTGTGAA GTGGCGGCCG
  CCTGAGGCCC CGCGACTCGG CTCGGCTCCG CTCGGCGCGG CACGGCGCGG GGCAGCGTTC
  GCGGCAGCGG CCGGCGGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367145524	MGP_WTSI_5_149864122	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A	A	T	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240334265					SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A	A	T	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367145524	MGP_WTSI_5_149864122	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148989356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	within coordinates
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	1313 bp proximal
Hmgb1	high mobility group box 1	within coordinates
Rr124812	regulatory region 124812	within coordinates
Rr378801	regulatory region 378801	530 bp downstream
Rr399531	regulatory region 399531	464 bp upstream
Tssr1757	transcription start site region 1757	668 bp upstream
Tssr49872	transcription start site region 49872	649 bp upstream
Tssr54613	transcription start site region 54613	1941 bp upstream
Tssr54614	transcription start site region 54614	1233 bp upstream
Tssr54615	transcription start site region 54615	1156 bp upstream
Tssr54616	transcription start site region 54616	1091 bp upstream
Tssr54617	transcription start site region 54617	922 bp upstream
Tssr54618	transcription start site region 54618	838 bp upstream
Tssr54619	transcription start site region 54619	567 bp upstream
Tssr54620	transcription start site region 54620	492 bp downstream
Tssr54621	transcription start site region 54621	514 bp downstream