rs240337825 SNP Detail

Summary

• ID
  rs240337825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117011503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATCCTC ACTTAAGAGA
  TCAGCAGCAG AACTGGACAA AGTTCTCATC ACCGAGACAG TGCCGCATCA TCCCCTGCCC
  CCAGCTACAC AACCTGCTTT CCACCCACAC AGCACGTTAT TAGCCACCTA CACTCACATG
  TACCCCACTG AACCAGGAAG GGTCCACCCA CCCCAGCCCC ACAGCCACCT CACCTAGAAG
  Y
  TTGCCCTGCT GGAACTGCTC CTCCAGGAGG CTGCTGATTT TGGCATTCTT TTTCCTTTCA
  TCGTATTTCT TTTGAATTTT CTTTGATCGT TTTTTGTTTA AAATCTCTTC CTCCTCAGGA
  GTCTGAATGA AAAGAATATG AATTGATTTG TCACCAGGAA AGTCACAAGC CTCCTTGAAC
  CCCCCCCCCC CAAGTCGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362964186	MGP_WTSI_4_116826911	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240337825					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362964186	MGP_WTSI_4_116826911	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117011503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	1051 bp proximal
Gm22980	predicted gene, 22980	144 bp upstream
Gm26330	predicted gene, 26330	880 bp downstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	within coordinates
Rr398411	regulatory region 398411	1613 bp upstream
Rr598068	regulatory region 598068	977 bp distal
Rr598069	regulatory region 598069	1927 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	210 bp downstream
Snord55	small nucleolar RNA, C/D box 55	1465 bp downstream
Tssr38607	transcription start site region 38607	468 bp downstream
Tssr42956	transcription start site region 42956	1538 bp downstream
Tssr42957	transcription start site region 42957	1769 bp downstream
Tssr42958	transcription start site region 42958	1816 bp downstream
Tssr42959	transcription start site region 42959	1838 bp downstream
Tssr42960	transcription start site region 42960	1879 bp downstream
Tssr42961	transcription start site region 42961	1893 bp downstream