rs240341556 SNP Detail

Summary

• ID
  rs240341556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184544714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGGCCAG GCAATGTGCT
  GCCGGCTGAG TTGGACGCCC TGTAGAGGTG CCCTGTAGAG AGGCCACTGT GTGGAGAGTG
  GGAGAAGCAA GCAGAACGCT AGCACACACT GGCCTCAGCT AGCTGGGCGA CTCACTTCCC
  TGGGTTTGGG CATGAAATGT CACCCTCTAG CTTGCATGTC CCCCCGGCTG GTGGCGCTAT
  Y
  TGGGGAGGCT GAAGTAAATG ATGAGGTGTA GCCTAGCTGG GGAGGAAGGA AGTCTCCTGA
  GGGCTGGCCC CTTCCTGACC ATCTGCTTCC TTCCCTTGGC TTGTCAGGTA AAATTGACTC
  AGGATACAGC TTCATATCCC ACATTTACCT CACAGCCTGC TGGAAGCCAA GGGCCCAGGA
  CCCAGCGAAG GAGAAGACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169577	CHEV_1_186636396	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240341556					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184544714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	1180 bp distal
Gm70890	predicted gene, 70890	within coordinates
Mtarc1	mitochondrial amidoxime reducing component 1	1320 bp upstream
Mtarc2	mitochondrial amidoxime reducing component 2	551 bp downstream
Rr425290	regulatory region 425290	583 bp distal
Rr425291	regulatory region 425291	77 bp distal
Rr425292	regulatory region 425292	148 bp distal
Rr425293	regulatory region 425293	within coordinates
Rr425294	regulatory region 425294	1928 bp proximal
Tssr15650	transcription start site region 15650	1526 bp upstream
Tssr15651	transcription start site region 15651	1354 bp upstream
Tssr15652	transcription start site region 15652	1314 bp upstream
Tssr15653	transcription start site region 15653	1253 bp upstream
Tssr15654	transcription start site region 15654	1214 bp upstream
Tssr15655	transcription start site region 15655	1203 bp upstream