rs240343816 SNP Detail

Summary

• ID
  rs240343816
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84495779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGGCG GGCAGCCTGG
  GCGTCCCGAG CGGCGTGGGG CGTGCGGCCC CCTTGGGTCC TGCTGGGTGG CGGCGGCGGG
  AATACCTCGC TCTCCTCCGC CTCTACGAGT ATAACGTTGG AAAGCACGTA CACGTTCTAT
  CTGCCCAGGA CGGGGCTACC CGGGACGTGC CTTTCCTCGC CCGATCCGGC TGGGCCGACT
  K
  GCGCAGCTTT TATCTCCCAT CCTAGTTTTT GCTCCGCGCG CGGGAACAGC AAAACAGCAA
  TGGTGCGCTT GGCCAAGTTG CTTGGGACTA GGAACGGGGG TCGCGGCCTG TCCCGTAGGT
  GGCAGCTCCG GCCCGGCTGC ACGTGGAGAC GCAGTAGGGG TGGGGGCGGG AGCGGCCAGC
  CTGGAGGAGC ATTGGCGCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399282296	MGP_WTSI_17_84587691	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240343816					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399282296	MGP_WTSI_17_84587691	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84495779 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	1099 bp distal
Cpgi9566	CpG island 9566	within coordinates
Gm36279	predicted gene, 36279	1529 bp upstream
Gm56881	predicted gene, 56881	within coordinates
Rr333589	regulatory region 333589	1022 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	177 bp downstream
Thada	thyroid adenoma associated	1725 bp downstream
Tssr146045	transcription start site region 146045	1234 bp downstream
Tssr146046	transcription start site region 146046	253 bp upstream
Tssr149656	transcription start site region 149656	1969 bp upstream
Tssr149657	transcription start site region 149657	1739 bp upstream
Tssr149658	transcription start site region 149658	1696 bp upstream
Tssr149659	transcription start site region 149659	1660 bp upstream
Tssr149660	transcription start site region 149660	1634 bp upstream
Tssr149661	transcription start site region 149661	1571 bp upstream
Tssr149662	transcription start site region 149662	1531 bp upstream
Tssr149663	transcription start site region 149663	1462 bp upstream
Tssr149664	transcription start site region 149664	1419 bp upstream
Tssr149665	transcription start site region 149665	1347 bp upstream
Tssr149666	transcription start site region 149666	1285 bp upstream
Tssr149667	transcription start site region 149667	1185 bp upstream
Tssr149668	transcription start site region 149668	1161 bp upstream
Tssr149669	transcription start site region 149669	1099 bp upstream
Tssr149670	transcription start site region 149670	594 bp upstream
Tssr149671	transcription start site region 149671	452 bp upstream
Tssr149672	transcription start site region 149672	397 bp upstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	404 bp upstream