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rs240343816 SNP Detail
Summary
  • ID
    rs240343816
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr17:84495779 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGAGGGGCG GGCAGCCTGG
    GCGTCCCGAG CGGCGTGGGG CGTGCGGCCC CCTTGGGTCC TGCTGGGTGG CGGCGGCGGG
    AATACCTCGC TCTCCTCCGC CTCTACGAGT ATAACGTTGG AAAGCACGTA CACGTTCTAT
    CTGCCCAGGA CGGGGCTACC CGGGACGTGC CTTTCCTCGC CCGATCCGGC TGGGCCGACT
    K
    GCGCAGCTTT TATCTCCCAT CCTAGTTTTT GCTCCGCGCG CGGGAACAGC AAAACAGCAA
    TGGTGCGCTT GGCCAAGTTG CTTGGGACTA GGAACGGGGG TCGCGGCCTG TCCCGTAGGT
    GGCAGCTCCG GCCCGGCTGC ACGTGGAGAC GCAGTAGGGG TGGGGGCGGG AGCGGCCAGC
    CTGGAGGAGC ATTGGCGCGT                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss399282296 MGP_WTSI_17_84587691 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240343816 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss399282296 MGP_WTSI_17_84587691 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84495779 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 1099 bp distal
Cpgi9566 CpG island 9566 within coordinates
Gm36279 predicted gene, 36279 1529 bp upstream
Gm56881 predicted gene, 56881 within coordinates
Rr333589 regulatory region 333589 1022 bp proximal
Rr340271 regulatory region 340271 within coordinates
Rr405496 regulatory region 405496 177 bp downstream
Thada thyroid adenoma associated 1725 bp downstream
Tssr146045 transcription start site region 146045 1234 bp downstream
Tssr146046 transcription start site region 146046 253 bp upstream
Tssr149656 transcription start site region 149656 1969 bp upstream
Tssr149657 transcription start site region 149657 1739 bp upstream
Tssr149658 transcription start site region 149658 1696 bp upstream
Tssr149659 transcription start site region 149659 1660 bp upstream
Tssr149660 transcription start site region 149660 1634 bp upstream
Tssr149661 transcription start site region 149661 1571 bp upstream
Tssr149662 transcription start site region 149662 1531 bp upstream
Tssr149663 transcription start site region 149663 1462 bp upstream
Tssr149664 transcription start site region 149664 1419 bp upstream
Tssr149665 transcription start site region 149665 1347 bp upstream
Tssr149666 transcription start site region 149666 1285 bp upstream
Tssr149667 transcription start site region 149667 1185 bp upstream
Tssr149668 transcription start site region 149668 1161 bp upstream
Tssr149669 transcription start site region 149669 1099 bp upstream
Tssr149670 transcription start site region 149670 594 bp upstream
Tssr149671 transcription start site region 149671 452 bp upstream
Tssr149672 transcription start site region 149672 397 bp upstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 404 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory