rs240352673 SNP Detail

Summary

• ID
  rs240352673
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156134144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTAAGCT AGGTGTGGTA
  ACACAAGCTT GTAATCCCAG CACCTGGGAG GCAGAAAACA GGAAATTGCC AAAAGCTTGA
  GGCTAGCCTA GGCTACATAG AGAGACCCTG TGAAACAACA ACAACAACAA AAAAAAAATA
  GCAAGGCTCA AGATATAGCT CAGCTGATAC AGTGCTGCAT AGCATATATA AGATCAGCCC
  M
  GGATCTGGTC CCCTGCACCA GGAATGGCAT TGCACACTTA GAATCCCATT ACTTGAGGAG
  GATCAGAAAT TCAAGGTAGT CTGACTATAT AAGTTGGTGA CCAGCCTGAG CTACACTACA
  TGAAACCTTC CCTCAAAAAT TAAAAAAACA AAACCAAGGA AAACCCACAA AAATAACAAA
  AACTTCATAG AAAACCTAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444914	CHEV_4_155423796	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240352673					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156134144 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	657 bp proximal
Rr106662	regulatory region 106662	45 bp proximal
Tssr44999	transcription start site region 44999	1715 bp upstream
Tssr45000	transcription start site region 45000	778 bp downstream
Tssr45001	transcription start site region 45001	811 bp downstream
Tssr45002	transcription start site region 45002	1046 bp downstream
Tssr45003	transcription start site region 45003	1075 bp downstream
Tssr45004	transcription start site region 45004	1098 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates