rs240354116 SNP Detail

Summary

• ID
  rs240354116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23493362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAATATGTg tggcccgtac ggggatcgaa
  cccgcgacct tggcgttatt agcaccacgc tctaaccaac tgagctaacc ggccAGACAT
  GAGAGTTGCT TCTACGACCT CTACAGATAT TTGATGACAA CGTTGACAAC TAAGAGTTTC
  R
  TCTTGTTTTT CGAAATTTTA AGATTTTTTT TAAAGATGTA AAAACTTACA AACCACCTTA
  TTCGAAGCAG AAAGTTTTTA GCAGCAGAAA AAAAAAATCC GTACGAGAGC AACAAATGTC
  TCCTTGCACT CACTCATTCA TCAACTCGGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324288359	CHEV_13_23401061	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240354116					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23493362 () rs orientation: forward

Symbol	Name	Function Class
4930557F10Rik	RIKEN cDNA 4930557F10 gene	within coordinates
4930597G05Rik	RIKEN cDNA 4930597G05 gene	239 bp downstream
Cpgi5346	CpG island 5346	297 bp proximal
n-TIaat9	nuclear encoded tRNA isoleucine 9 (anticodon AAT)	67 bp upstream
n-TVcac11	nuclear encoded tRNA valine 11 (anticodon CAC)	1491 bp downstream
Rr475820	regulatory region 475820	1267 bp distal
Rr475821	regulatory region 475821	within coordinates
Tssr121691	transcription start site region 121691	961 bp downstream