rs240355972 SNP Detail

Summary

• ID
  rs240355972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137744059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTCTGGC ACGTTCCTTG
  AGACTCTTTT GGAGAACCTG CAAAAGCCTA CAAGTAAGGG AATCCCTGGC CTCCCGCAGG
  CTCCTCCTCT TTTTCTCCGC CCTCATGCCC CTCCCTCCGA GGAAGAGTTG CCTGGAACCT
  GGCAGGTGTA GGGTTAAAGC AACCAGTTTG GGACCCGCAG CGGCAGAAGC TGCAGCAGCA
  R
  CAGCAGCAGC TACAGCAGCA ACTGTAGGCT GCGGCTGCGG CTGCGGCTGT GGCAGGCCTG
  GCTCCGGGCC AGCTGGCAGG GAGCCTTAGG AGGGAGGAGG GAGGAGGGAG GAGGAAGAGG
  GGAAGGAGGA GGAGAGGAGC AGTGAGCAGG CCCGAGAAGG CAGGACTTCC TGGTGTGGGG
  GTTGTCAACA GCCCAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366884377	MGP_WTSI_5_138187025	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	G	G	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240355972					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	G	G	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366884377	MGP_WTSI_5_138187025	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137744059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16849	CpG island 16849	210 bp proximal
Gm57848	predicted gene, 57848	215 bp upstream
Gm68923	predicted gene, 68923	1187 bp upstream
Rr622970	regulatory region 622970	1265 bp distal
Rr622971	regulatory region 622971	within coordinates
Rr622972	regulatory region 622972	697 bp proximal
Rr622973	regulatory region 622973	1502 bp proximal
Rr622974	regulatory region 622974	1775 bp proximal
Tsc22d4	Tsc22 domain family, member 4	215 bp upstream
Tssr49366	transcription start site region 49366	within coordinates
Tssr49367	transcription start site region 49367	156 bp upstream
Tssr49368	transcription start site region 49368	170 bp upstream
Tssr49369	transcription start site region 49369	316 bp upstream
Tssr49370	transcription start site region 49370	386 bp upstream
Tssr49371	transcription start site region 49371	441 bp upstream
Tssr49372	transcription start site region 49372	558 bp upstream
Tssr49373	transcription start site region 49373	750 bp upstream
Tssr49374	transcription start site region 49374	842 bp upstream
Tssr49375	transcription start site region 49375	893 bp upstream
Tssr49376	transcription start site region 49376	1088 bp upstream
Tssr49377	transcription start site region 49377	1155 bp upstream
Tssr49378	transcription start site region 49378	1269 bp upstream
Tssr49379	transcription start site region 49379	1714 bp upstream
Tssr49380	transcription start site region 49380	1811 bp upstream
Tssr49381	transcription start site region 49381	1846 bp upstream
Tssr49382	transcription start site region 49382	1917 bp upstream