rs240357135 SNP Detail

Summary

• ID
  rs240357135
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89786558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACATTTT CAAGTATAAA
  AAATAGTCAC ATTAATATGG AGGCAAATAC TCTCTCTTTC ATAATGTAAT TCTAAAATTG
  TAGGATCATT TCTACAAAGA AATGTCCTAG CAAAATATAA ACGAAGGAAA ATGTTAGAAT
  ATTACTCCAT TCAAATAGCT TATCTTATAA ACAATATTTA AAGATTTATC TTAAAAATTT
  K
  GAATAGCAGA TTGGTAAATA TGAGACAGAT TGTTAAATAT GAGACATTCA CTTTCCTCAT
  ACTCAGAACT AGTGATATCT CTATTGGGAT AAAATATGAC TATTCAATTG AATTTTTGTT
  TGCATTTACC TATTCTGTTT GTGTTGGGGG CAAGTACTTA TGTACCATGA CTTTTGTGTA
  GAGGTCAAAG AACAACTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404036094	MGP_WTSI_X_87988291	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240357135					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404036094	MGP_WTSI_X_87988291	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89786558 () rs orientation: forward

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	1594 bp downstream
Tssr161463	transcription start site region 161463	1706 bp upstream
Tssr161464	transcription start site region 161464	1768 bp upstream
Tssr161465	transcription start site region 161465	1783 bp upstream
Tssr161466	transcription start site region 161466	1818 bp upstream
Tssr161467	transcription start site region 161467	1905 bp upstream
Tssr161468	transcription start site region 161468	1978 bp upstream
Tssr163758	transcription start site region 163758	1733 bp downstream
Tssr163759	transcription start site region 163759	1846 bp downstream