rs240365829 SNP Detail

Summary

• ID
  rs240365829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119067343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCAACAA AAGATGAAGA
  GTTCAAAAGG AAATGTTTAC AAGAATGAGG GAGAGGCGCA AACAAAAGGG AATGCACTCC
  TGTGGGTGAA ACAGGGAAGC CAGGATACCA GGAATCACCT GTTGGTCCAC TCTCGCAGAA
  GGAAGGGCTG TCCTGAGCTG CATCAGTGAA GCACGAATCC CAGGATCTGG TTTACACAAA
  Y
  GCAGCCTATC CAACTTTGGG GTTCTCTTCT TACTGGAAAA CTGGAAATGA TGTCCCAAGG
  GCAGGCCACA GACAGCGAAA TCGTTTGCAT AAGCTTTCCC CGACATTTCT CCTCCAACTC
  CTTCCCAAAC GCCCCCAGCC AAGGGTAGGG AATGCCGGCT CTAACCGGAA AGGAAGGCCG
  GAGGCAACCG CACCTGCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355426187	MGP_WTSI_2_119062598	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240365829					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355426187	MGP_WTSI_2_119062598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119067343 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	within coordinates
Cpgi12109	CpG island 12109	within coordinates
Rr563445	regulatory region 563445	within coordinates
Rr563446	regulatory region 563446	193 bp proximal
Rr563447	regulatory region 563447	403 bp proximal
Rr563448	regulatory region 563448	517 bp proximal
Rr563449	regulatory region 563449	759 bp proximal
Rr563450	regulatory region 563450	1215 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	498 bp upstream
Tssr19609	transcription start site region 19609	343 bp upstream
Tssr19610	transcription start site region 19610	489 bp upstream
Tssr19611	transcription start site region 19611	528 bp upstream
Tssr19612	transcription start site region 19612	591 bp upstream
Tssr19613	transcription start site region 19613	620 bp upstream
Tssr19614	transcription start site region 19614	649 bp upstream
Tssr19615	transcription start site region 19615	669 bp upstream
Tssr19616	transcription start site region 19616	772 bp upstream
Tssr19617	transcription start site region 19617	784 bp upstream
Tssr19618	transcription start site region 19618	816 bp upstream
Tssr19619	transcription start site region 19619	863 bp upstream