rs240365927 SNP Detail

Summary

• ID
  rs240365927
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72305011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctcctcctc ctccAAAGTA TCATACCTGA
  AATTCTCTTT TGTATCTCTG CTCCTCCATC AGAGTGTACA CTCTCTGGAC CTTGTATCCT
  CAGTACTCAG AATAGCACCT GCTTACAACC TTGCACTCAG TTAGGGGCAG GACTTTGAAC
  T
  GCCCTGATGG TGAAGCCCAG AGGATATACA TTGTCTGCAG GACACACACA AGCACAGAAG
  TGAAAACTTT AAGGAAACAA CATGCACACG TCCTGGGCTC ACATTGGATT TCGTTGAAAA
  AGAAATGCAG GAGCACAGAG AGACAAGCCT                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342575	CHEV_2_72312724	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240365927					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72305011 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	1529 bp upstream
Cpgi11756	CpG island 11756	1245 bp proximal
Rr397036	regulatory region 397036	1099 bp upstream
Rr558978	regulatory region 558978	130 bp proximal
Rr558979	regulatory region 558979	1002 bp proximal
Rr558980	regulatory region 558980	1503 bp proximal
Tssr18351	transcription start site region 18351	1329 bp upstream
Tssr18352	transcription start site region 18352	1506 bp upstream
Tssr18353	transcription start site region 18353	1546 bp upstream
Tssr18354	transcription start site region 18354	1558 bp upstream