rs240368724 SNP Detail

Summary

• ID
  rs240368724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:46347592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCATTCA AAACAAGAAC
  AAAGCTTTGT ACGTGAAGAA GAGGAGGAGA CAGATACAGG GGAGGAAAAT GTTCCTACTA
  CACTTTGGGT TTTAAGTCCA TTCAACTTCC CAAGTTTCAG TTTTCACTGC TATAAAACAT
  AGTTTGAACT AACTGTTCTC TAACAGTTCT TAGTGCCAGG ATCTCCGATC TGAGGACCCC
  Y
  TTTGCCACCT GGCCACACTG GCTGCCCATC TCCTCCATGA AGATGCTGCT GTTACAAAAG
  TGTTGTTCAT TTGCTCCCAG GAAATTCTGT AGCAAGGAAC CCTTACTCTG GACTCCCACG
  GAGGCCAAGG AAGCGGGAAA AGAGAAAGTG AAGCCTTTAG AGCCACTTCA CTGCCTAGGA
  GGGAGATGCA GGTTTGTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325609395	CHEV_18_46374179	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240368724					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46347592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10017	CpG island 10017	1727 bp distal
Rr352866	regulatory region 352866	791 bp distal
Trim36	tripartite motif-containing 36	1918 bp upstream
Tssr153217	transcription start site region 153217	1935 bp upstream
Tssr153218	transcription start site region 153218	1891 bp upstream
Tssr153219	transcription start site region 153219	1704 bp upstream