rs240377827 SNP Detail

Summary

• ID
  rs240377827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180696992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccgaagagt caaggaagga ttgcttgatc
  ccttaagttt ggaggccagc cttagcaaaa tgacaagaca ctatctcaag acaGTTCCCC
  CAAACCCCCT CCAAATGTCA GGTGCAGCCC TTTAGATTTT ATAGAATTCT ATTTGTGAGA
  Y
  GAAAGGTTCT TTGAGCTTCT GGCAGGTCAG CTGGACAGCC ATGCCTGAAG AATTTCTGTT
  GTCACAGCAA GTGGCTGAAC CTAATGGCCA GGTTAGCAGA GCTGTGCCCT GTCTTGGGAG
  TATGAGCAGC CCTTGGTCAG CTCCTCACAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320160139	CHEV_1_182799558	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240377827					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180696992 () rs orientation: forward

Symbol	Name	Function Class
Gm71256	predicted gene, 71256	within coordinates
Rr424611	regulatory region 424611	905 bp proximal
Sde2	SDE2 telomere maintenance homolog (S. pombe)	1314 bp downstream