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rs240387161 SNP Detail
Summary
  • ID
    rs240387161
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128501 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTATC CCCCCTCCAC CTGTCATCAA
Y
CTCCTCCACA TCTCCCCTCT CCCTC                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198932 CHEV_7_51734447 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs240387161 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128501 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1698 bp downstream
Tssr2225 transcription start site region 2225 1658 bp downstream
Tssr2226 transcription start site region 2226 1132 bp downstream
Tssr2227 transcription start site region 2227 57 bp downstream
Tssr2228 transcription start site region 2228 1001 bp upstream
Tssr2229 transcription start site region 2229 1277 bp upstream
Tssr2230 transcription start site region 2230 1456 bp upstream
Tssr2231 transcription start site region 2231 1589 bp upstream
Tssr2232 transcription start site region 2232 1764 bp upstream
Tssr2233 transcription start site region 2233 1797 bp upstream
Tssr2234 transcription start site region 2234 1956 bp upstream
Tssr66237 transcription start site region 66237 1987 bp downstream
Tssr66238 transcription start site region 66238 1968 bp downstream
Tssr66239 transcription start site region 66239 1917 bp downstream
Tssr66240 transcription start site region 66240 1836 bp downstream
Tssr66241 transcription start site region 66241 1824 bp downstream
Tssr66242 transcription start site region 66242 1744 bp downstream
Tssr66243 transcription start site region 66243 1730 bp downstream
Tssr66244 transcription start site region 66244 1679 bp downstream
Tssr66245 transcription start site region 66245 1617 bp downstream
Tssr66246 transcription start site region 66246 1589 bp downstream
Tssr66247 transcription start site region 66247 1542 bp downstream
Tssr66248 transcription start site region 66248 1501 bp downstream
Tssr66249 transcription start site region 66249 1478 bp downstream
Tssr66250 transcription start site region 66250 1459 bp downstream
Tssr66251 transcription start site region 66251 1434 bp downstream
Tssr66252 transcription start site region 66252 1403 bp downstream
Tssr66253 transcription start site region 66253 1375 bp downstream
Tssr66254 transcription start site region 66254 1327 bp downstream
Tssr66255 transcription start site region 66255 1300 bp downstream
Tssr66256 transcription start site region 66256 1251 bp downstream
Tssr66257 transcription start site region 66257 1240 bp downstream
Tssr66258 transcription start site region 66258 1197 bp downstream
Tssr66259 transcription start site region 66259 1161 bp downstream
Tssr66260 transcription start site region 66260 1054 bp downstream
Tssr66261 transcription start site region 66261 1033 bp downstream
Tssr66262 transcription start site region 66262 1026 bp downstream
Tssr66263 transcription start site region 66263 1014 bp downstream
Tssr66264 transcription start site region 66264 990 bp downstream
Tssr66265 transcription start site region 66265 947 bp downstream
Tssr66266 transcription start site region 66266 930 bp downstream
Tssr66267 transcription start site region 66267 893 bp downstream
Tssr66268 transcription start site region 66268 877 bp downstream
Tssr66269 transcription start site region 66269 841 bp downstream
Tssr66270 transcription start site region 66270 806 bp downstream
Tssr66271 transcription start site region 66271 774 bp downstream
Tssr66272 transcription start site region 66272 722 bp downstream
Tssr66273 transcription start site region 66273 704 bp downstream
Tssr66274 transcription start site region 66274 699 bp downstream
Tssr66275 transcription start site region 66275 679 bp downstream
Tssr66276 transcription start site region 66276 659 bp downstream
Tssr66277 transcription start site region 66277 639 bp downstream
Tssr66278 transcription start site region 66278 595 bp downstream
Tssr66279 transcription start site region 66279 550 bp downstream
Tssr66280 transcription start site region 66280 528 bp downstream
Tssr66281 transcription start site region 66281 488 bp downstream
Tssr66282 transcription start site region 66282 471 bp downstream
Tssr66283 transcription start site region 66283 457 bp downstream
Tssr66284 transcription start site region 66284 445 bp downstream
Tssr66285 transcription start site region 66285 431 bp downstream
Tssr66286 transcription start site region 66286 392 bp downstream
Tssr66287 transcription start site region 66287 356 bp downstream
Tssr66288 transcription start site region 66288 331 bp downstream
Tssr66289 transcription start site region 66289 249 bp downstream
Tssr66290 transcription start site region 66290 211 bp downstream
Tssr66291 transcription start site region 66291 185 bp downstream
Tssr66292 transcription start site region 66292 153 bp downstream
Tssr66293 transcription start site region 66293 131 bp downstream
Tssr66294 transcription start site region 66294 107 bp downstream
Tssr66295 transcription start site region 66295 155 bp upstream
Tssr66296 transcription start site region 66296 288 bp upstream
Tssr66297 transcription start site region 66297 331 bp upstream
Tssr66298 transcription start site region 66298 356 bp upstream
Tssr66299 transcription start site region 66299 425 bp upstream
Tssr66300 transcription start site region 66300 432 bp upstream
Tssr66301 transcription start site region 66301 456 bp upstream
Tssr66302 transcription start site region 66302 470 bp upstream
Tssr66303 transcription start site region 66303 511 bp upstream
Tssr66304 transcription start site region 66304 519 bp upstream
Tssr66305 transcription start site region 66305 529 bp upstream
Tssr66306 transcription start site region 66306 563 bp upstream
Tssr66307 transcription start site region 66307 620 bp upstream
Tssr66308 transcription start site region 66308 673 bp upstream
Tssr66309 transcription start site region 66309 694 bp upstream
Tssr66310 transcription start site region 66310 732 bp upstream
Tssr66311 transcription start site region 66311 809 bp upstream
Tssr66312 transcription start site region 66312 825 bp upstream
Tssr66313 transcription start site region 66313 846 bp upstream
Tssr66314 transcription start site region 66314 854 bp upstream
Tssr66315 transcription start site region 66315 874 bp upstream
Tssr66316 transcription start site region 66316 933 bp upstream
Tssr66317 transcription start site region 66317 945 bp upstream
Tssr66318 transcription start site region 66318 990 bp upstream
Tssr66319 transcription start site region 66319 1013 bp upstream
Tssr66320 transcription start site region 66320 1040 bp upstream
Tssr66321 transcription start site region 66321 1058 bp upstream
Tssr66322 transcription start site region 66322 1078 bp upstream
Tssr66323 transcription start site region 66323 1124 bp upstream
Tssr66324 transcription start site region 66324 1153 bp upstream
Tssr66325 transcription start site region 66325 1183 bp upstream
Tssr66326 transcription start site region 66326 1224 bp upstream
Tssr66327 transcription start site region 66327 1238 bp upstream
Tssr66328 transcription start site region 66328 1254 bp upstream
Tssr66329 transcription start site region 66329 1293 bp upstream
Tssr66330 transcription start site region 66330 1312 bp upstream
Tssr66331 transcription start site region 66331 1326 bp upstream
Tssr66332 transcription start site region 66332 1347 bp upstream
Tssr66333 transcription start site region 66333 1395 bp upstream
Tssr66334 transcription start site region 66334 1407 bp upstream
Tssr66335 transcription start site region 66335 1416 bp upstream
Tssr66336 transcription start site region 66336 1425 bp upstream
Tssr66337 transcription start site region 66337 1443 bp upstream
Tssr66338 transcription start site region 66338 1499 bp upstream
Tssr66339 transcription start site region 66339 1550 bp upstream
Tssr66340 transcription start site region 66340 1595 bp upstream
Tssr66341 transcription start site region 66341 1640 bp upstream
Tssr66342 transcription start site region 66342 1702 bp upstream
Tssr66343 transcription start site region 66343 1734 bp upstream
Tssr66344 transcription start site region 66344 1879 bp upstream
Tssr66345 transcription start site region 66345 1912 bp upstream
Tssr66346 transcription start site region 66346 1968 bp upstream
Tssr72199 transcription start site region 72199 1594 bp upstream
Tssr72200 transcription start site region 72200 636 bp upstream
Tssr72201 transcription start site region 72201 126 bp upstream
Tssr72202 transcription start site region 72202 716 bp downstream
Tssr72203 transcription start site region 72203 1102 bp downstream
Tssr72204 transcription start site region 72204 1698 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory