rs240389359 SNP Detail

Summary

• ID
  rs240389359
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:25776880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGGAGA GAGGGAGAGA
  GGGAGAGGGA GAGGGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAAGCAGGCA
  ATCAAGAGTG CTAGCTGAAT CAGCCCCTCA TGTTGTGGAT CTACAAGCAA CCCCCAACAC
  CTCAGGAGTG AAACTCCAAA GCCTACCCAT TCTCCTTTGG CTTCTGTGTC GTCCCCCCCC
  A
  ACCCCCCACC CCCCCCCCCC GCCGCCGCCA CAGCAGCTAT TGTGTGAGAG ACCAGCAGAC
  AGCCTGAAAC CCTATGGGTT GCCAAAACCT CAGCCAAGAA CTATAAGACC CACGTCTGGC
  TGTGCTGCTG CAGCAGGCCC CTAACCCCTT ACTCCAGGTG AGACTAGGTA GAGTGCTTTG
  ACTGAGAGAG TCCTCACATC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss393388644	MGP_WTSI_15_25706549	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs240389359					SNP	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393388644	MGP_WTSI_15_25706549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:25776880 () rs orientation: forward

Symbol	Name	Function Class
Myo10	myosin X	within coordinates
Tssr130835	transcription start site region 130835	397 bp downstream
Tssr130836	transcription start site region 130836	1325 bp upstream