rs240389371 SNP Detail

Summary

• ID
  rs240389371
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25147188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTGACTG ACAGCTTATC
  GCTGTTTTTA AAAGAAAATT CTGTTACGTA CGAGGTTTGG AATCTTTCAG CACCCTTCCT
  AGATGCAGCC ACATTTTGAA AAAGTTTAGA GCTCTTGACT CCAATGCTTT AATTCTGAAT
  TCTTGTTTTG CTGAAGACTA CCATATATTA GTCGTGTATT AAAGGAAAAA AAATATTTAT
  K
  TTAAGCCCAA GAAAGGGTTT TTGGTCTGAA TCCCCCACAT CCTCTGAATG CAATAAAGAG
  GAAGAATGCA GAATCCAGGC AAAGCTCTGT GTGGAGAAAC AGTATTTTCC CTTCAATTAA
  TGATTAATTC CTCAGCTGGT GGGCCAGGCG GTCTCTGACC TCCACGTGAC AGCCATGTGC
  CCCAGGGCTT CTCTCTAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323938307	CHEV_12_25782054	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240389371					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25147188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	428 bp distal
Cpgi4501	CpG island 4501	1142 bp proximal
Gm59395	predicted gene, 59395	within coordinates
Id2	inhibitor of DNA binding 2	1097 bp upstream
Rr403250	regulatory region 403250	826 bp downstream
Rr463954	regulatory region 463954	719 bp distal
Rr463955	regulatory region 463955	60 bp distal
Rr463956	regulatory region 463956	within coordinates
Rr463957	regulatory region 463957	954 bp proximal
Tssr112979	transcription start site region 112979	1450 bp downstream
Tssr112980	transcription start site region 112980	740 bp downstream
Tssr112981	transcription start site region 112981	702 bp downstream
Tssr112982	transcription start site region 112982	239 bp upstream
Tssr112983	transcription start site region 112983	1808 bp upstream
Tssr115884	transcription start site region 115884	1396 bp upstream
Tssr115885	transcription start site region 115885	1093 bp upstream
Tssr115886	transcription start site region 115886	50 bp downstream