rs240398617 SNP Detail

Summary

• ID
  rs240398617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134644400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gacgatggg ggacattttt tattcTGTTA
  TACAGACCAA TCTATATGAG TGGGTTCAGC CCCTGTGCAT GGTACTCCAT GAGACTATGA
  AGGAAGCTAT CCAAAAGAGA CCTGTACTTA GGTCAAACAT CCTACAAGCC TGACTGGCAA
  R
  TCTGACTGgc aggtccaggg cgagattatt ctgggctaaa tagccctgct aaatagccac
  ttactgccta tctctgtttg actggcattc ttgagacaag cagttaaaat cctctttgga
  atATGCAGAC ACCACTTTCA GTTCCTCTTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321349952	CHEV_4_134473004	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240398617					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134644400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15052	CpG island 15052	1877 bp distal
Rr100259	regulatory region 100259	1599 bp distal
Rr367743	regulatory region 367743	1393 bp upstream
Tssr39578	transcription start site region 39578	1970 bp downstream
Tssr43946	transcription start site region 43946	1277 bp downstream