rs240403018 SNP Detail

Summary

• ID
  rs240403018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:57552678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAAGGC GGGGGAAGGG
  GGCGGGAGGG AGTCCGGGGG GGAGGAAACA ATGTAGCCGG CGCGGCCCCG GCAGAGTTCC
  GCTTCCGAAC GCGGCCACGG AGGTTCGGTT TGGGGACGTC GCGCCGCCGC CGGGGGGCCG
  CCCCGGGCGT TCGATCGCCG CTCGCAGGGC TTGCCTAAGC CCCACACCCC GGAGGCTGGG
  Y
  GGCCAGAGGC TGGCCAGGCG GGAGGGACGG CTGGCCCGGG GACGGCCCCG ACGGCGGCGC
  GGCCCGGGTT GGCCCTGCTC GGACCCCACC CCGGTGGGAT TCCCCGGGGC AGGGCGCAGG
  GTGGCGCGGA AGCGCAAGGA AGGCAGCAGG CTCAGCGGCG GCGGCCAACC TCAGCTCGCC
  CGGGCTCCGA TGGGAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377693412	MGP_WTSI_9_57493202	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240403018					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377693412	MGP_WTSI_9_57493202	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57552678 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21828	CpG island 21828			within coordinates
Csk	c-src tyrosine kinase			Intron
				mRNA-UTR
Rr679716	regulatory region 679716			110 bp proximal
Rr679717	regulatory region 679717			248 bp proximal
Rr679718	regulatory region 679718			297 bp proximal
Rr679719	regulatory region 679719			1200 bp proximal
Tssr85319	transcription start site region 85319			116 bp downstream
Tssr85320	transcription start site region 85320			398 bp upstream
Tssr89801	transcription start site region 89801			1155 bp upstream
Tssr89802	transcription start site region 89802			259 bp upstream
Tssr89803	transcription start site region 89803			215 bp upstream
Tssr89804	transcription start site region 89804			188 bp upstream
Tssr89805	transcription start site region 89805			37 bp downstream
Tssr89806	transcription start site region 89806			137 bp downstream
Tssr89807	transcription start site region 89807			166 bp downstream
Tssr89808	transcription start site region 89808			1315 bp downstream
Tssr89809	transcription start site region 89809			1351 bp downstream