rs240405372 SNP Detail

Summary

• ID
  rs240405372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90946854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGCTAT GTGGGTCCCT
  CATAGCCCAC GCTGATGTCC CCTAGTCAGA CTGCCGAGTC TCAAGAGAAG GCTATGGCAT
  GTGAGCTGAC GACAGCTCAG TAAGAGAGCA GCAGTTTTTT AAAAGTATTT TTTAATTCAT
  TTATCGTGTA TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TAAGAGTGTG
  Y
  ACACTTGCCA CAGCATAAAT GTGGAGGTCA GTGACAACTT GCAGGAGTCA GTTCTCTCCT
  GCCACCAGTG GACCCCAGAG GTGGAACTCA GGTCACCAGG CAACAGACAC CTTTACCAAC
  TTGGTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT
  CTTCTTCTTC TTCTTCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	I/LnJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss354807931	MGP_WTSI_2_90956666	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	FVB/NJ	I/LnJ	MA/MyJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs240405372					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354807931	MGP_WTSI_2_90956666	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90946854 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	879 bp distal
Mybpc3	myosin binding protein C, cardiac	1635 bp upstream
Rr560651	regulatory region 560651	1299 bp distal
Rr560652	regulatory region 560652	1236 bp distal
Rr560653	regulatory region 560653	1145 bp proximal
Spi1	Spi-1 proto-oncogene	750 bp downstream
Tssr18853	transcription start site region 18853	1338 bp downstream
Tssr18854	transcription start site region 18854	1296 bp downstream
Tssr18855	transcription start site region 18855	1119 bp downstream
Tssr18856	transcription start site region 18856	1071 bp downstream
Tssr18857	transcription start site region 18857	955 bp downstream
Tssr18858	transcription start site region 18858	912 bp downstream
Tssr18859	transcription start site region 18859	807 bp downstream
Tssr18860	transcription start site region 18860	1627 bp upstream
Tssr25158	transcription start site region 25158	752 bp upstream