rs240406274 SNP Detail

Summary

• ID
  rs240406274
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34923497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGAGGG AGTAAGACCC
  TCCCACAACT GGAGTTACAA ATGTATTGAG CTGCTGTGTG AGTGCTTGGA ACCTAGTCCT
  GGTCCTCCAG AAGAAAGTAG TAGCCAGTGC TCTTAACCAC CAAACTACCT CTCCAACCCT
  CATGGGAACA TTTTTTTGAA CAGCATTCTT TACATTATAT TTGTAATCAT GAGCACGGTA
  W
  GTTCAAAAGA TGTCAAGGTT TTGCTCATGA AAAGAAAAGA TGAAGATGGA GGAGGGGGGA
  AGAAGGAAAA AATTACAATT TTTGCACACC TAGTTTCTGC AGAGATTTTA CCAGTTATGT
  GATAAATACC CCTGTAGCTG TGGGTGAGAG GGGTGAGCGG AGGCTATTCC TTCATAGGTC
  GATGGCTTTC TGTTTCCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374229324	MGP_WTSI_8_35519397	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	T	A	A	T	A	A	A	T	T	T	T	T	T	T	A	A	A	T	A	A	T	T	T	T	A	A	A	T	A	T	T	T	T	A	T	A	A	A	A	T	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240406274					SNP	A	A	A	A	A	T	A	A	T	A	A	A	T	T	T	T	T	T	T	A	A	A	T	A	A	T	T	T	T	A	A	A	T	A	T	T	T	T	A	T	A	A	A	A	T	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374229324	MGP_WTSI_8_35519397	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34923497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	641 bp distal
Gm39159	predicted gene, 39159	507 bp downstream
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	575 bp upstream
Rr400818	regulatory region 400818	714 bp downstream
Rr662016	regulatory region 662016	558 bp distal