rs240407119 SNP Detail

Summary

• ID
  rs240407119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13439614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAGAAC CTCAGTGGTT
  CCTATAGGAT TTACCCTGAC AGATTCCTGT CTCTGATGCA GAAGGAGCCC ATGTAGAATA
  CCCCCTGCTT CTCCAGTCTG AATCAACAAC TCAAGACCCC TGCTGGCTAA GATTTCTTAA
  GAGCAGAACA TGATGAGTGT GTGTGGAGTC CGGGTGGGTA GATGAAGGGC CCAGTCCCCC
  R
  TCGTTGAGTG TGGGGAGGGG CCATTTCCAG AGCAGGACCC TTGTAACTCA CTCTGTTCAT
  TTTAATAATG AAGCAGGGCT TCCCCTCCTC GAAGCCGAAG CTGGGGTCCG CCAGGCCTGA
  GCAGTTTTGT AGCATGTCTG CAGTGAACTT GCAGGAGAAC TTGGTGTGGT TTGGAGCTGC
  AAAGCTCTCC TGGAAGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322506491	CHEV_8_13389614	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240407119					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13439614 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	Intron
Gm45410	predicted gene 45410	1492 bp upstream
Rr659923	regulatory region 659923	1234 bp proximal
Tssr80441	transcription start site region 80441	799 bp upstream
Tssr80442	transcription start site region 80442	79 bp downstream
Tssr80443	transcription start site region 80443	245 bp downstream
Tssr80444	transcription start site region 80444	485 bp downstream