rs240409832 SNP Detail

Summary

• ID
  rs240409832
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131454270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACCGCA CCCAATCCCA
  GTCGGGTGGG AGGCATCAGT GAGAGTCGCT CCGGGAGGCG CGAGAGGCGG CGGCAAGGAG
  GCTGAGGGAA GAGCTCCAAT GCTGCGGCGG GCCCCTGCCT CCTAGGCCGC CCTGTCCCCG
  CCGGCGCACA AGCGGCTCCA GGCAGTGTCG CCTACTCCCG GCGGCTGGAG GAAGGGCCGC
  R
  CGCAGGAAGA GCGAGCAGAG GCCGCGCGGT GCGGGAGGAC AGGAAGCAGG AGGCGGGCGT
  GAGGTGGGGT CCTGAGGCAG GAGAGAGCCC GGGCCAGCTC GAGCCGCCCA AGCTTGGACG
  ACCAGAGAGG GCGCCGAGAG GACGGCTTTG GGGGCGAGGC AGTGAGGGAA ACCGCGGTGG
  ACCGCTGCAA CGTGAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss351452101	MGP_WTSI_1_133423109	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240409832					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351452101	MGP_WTSI_1_133423109	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131454270 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	1371 bp upstream
Gm70877	predicted gene, 70877	92 bp upstream
Rr396286	regulatory region 396286	750 bp upstream
Rr396287	regulatory region 396287	1061 bp upstream
Rr418128	regulatory region 418128	1399 bp distal
Rr418129	regulatory region 418129	within coordinates
Rr418130	regulatory region 418130	283 bp distal
Rr418131	regulatory region 418131	103 bp proximal
Rr418132	regulatory region 418132	805 bp proximal
Rr418133	regulatory region 418133	1602 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	within coordinates
Tssr8627	transcription start site region 8627	1253 bp downstream
Tssr8628	transcription start site region 8628	1079 bp downstream
Tssr8629	transcription start site region 8629	1326 bp upstream
Tssr8630	transcription start site region 8630	1369 bp upstream
Tssr8631	transcription start site region 8631	1448 bp upstream
Tssr8632	transcription start site region 8632	1829 bp upstream
Tssr13589	transcription start site region 13589	1370 bp upstream
Tssr13590	transcription start site region 13590	1300 bp upstream
Tssr13591	transcription start site region 13591	1273 bp upstream
Tssr13592	transcription start site region 13592	1181 bp upstream
Tssr13593	transcription start site region 13593	1104 bp upstream
Tssr13594	transcription start site region 13594	994 bp upstream
Tssr13595	transcription start site region 13595	947 bp upstream
Tssr13596	transcription start site region 13596	914 bp upstream
Tssr13597	transcription start site region 13597	685 bp upstream
Tssr13598	transcription start site region 13598	within coordinates
Tssr13599	transcription start site region 13599	24 bp downstream
Tssr13600	transcription start site region 13600	193 bp downstream
Tssr13601	transcription start site region 13601	734 bp downstream
Tssr13602	transcription start site region 13602	770 bp downstream
Tssr13603	transcription start site region 13603	991 bp downstream