rs240410412 SNP Detail

Summary

• ID
  rs240410412
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95560722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTCTACA GAACAAGTTC
  TAGGACTGCC AGGGTTGTGT TAAACAGAGA AACCCTGTCT CAACAAAAAA CAAAACCCAG
  TTTCTTTTTT TTTAATATTT ATTTTATGTA TATCAATACA TGGTAGCTGT CTTCAGACAC
  ACAAGAAGAG GGCATCGGAT TCCGTTACCG ATGGTTGTGA GGCACCATGT GGTTGCTGGG
  W
  ATTGAACTCA GGACCTCTAT AAGAGTAGTC TCTTTCCAGC CCCCCAAAAC CCCTTTTCTT
  ACCGTGAGAG GAAGTAAGGA CAGGGAAAAT TAGGAAAAGG CCTTTGATGG TATGTTACAA
  GGAGACATAT ATTTTTTTTC CTTTCTTTTT GAGATGGTGG GTTGCCACAC CTACTTGCCC
  ATCTCCCTTA GTGTTAGGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358905263	MGP_WTSI_3_95457333	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240410412					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358905263	MGP_WTSI_3_95457333	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95560722 () rs orientation: forward

Symbol	Name	Function Class
Gm64625	predicted gene, 64625	within coordinates
Gm65002	predicted gene, 65002	460 bp upstream
Rr366848	regulatory region 366848	within coordinates
Rr580998	regulatory region 580998	1064 bp distal
Rr580999	regulatory region 580999	403 bp proximal
Rr581000	regulatory region 581000	471 bp proximal
Tssr971	transcription start site region 971	364 bp downstream
Tssr30618	transcription start site region 30618	1900 bp downstream
Tssr30619	transcription start site region 30619	1612 bp downstream
Tssr30620	transcription start site region 30620	339 bp upstream
Tssr30621	transcription start site region 30621	485 bp upstream
Tssr30622	transcription start site region 30622	506 bp upstream
Tssr30623	transcription start site region 30623	519 bp upstream
Tssr34504	transcription start site region 34504	1397 bp upstream
Tssr34505	transcription start site region 34505	1002 bp upstream
Tssr34506	transcription start site region 34506	307 bp downstream