rs240413282 SNP Detail

Summary

• ID
  rs240413282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69335315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACCTGAT TTTCCTATCA
  ATAAAATGTA TTTGGTGAAT ATTATTCCTA ATCAGATGTG AAATGACTTC CTCTTATCAT
  CTTTCTGTCC TCTCAGGGTA GCCCTTTACA GTGAGCTTCT TTAACCACAG CAGGCCTAGC
  CCTTTGTCCC ACAAATGAGT TTGCCTAGGG GTAAAAATGT GGGTGAGAAA GGCACAGCTT
  R
  GAGCGATCCC AGCTCCCCTC TGGGCTCCCA GTTTCCGTGT TCACTCTTTA TTTTTTTTTT
  TTTCCACGAA TAGTGTGCGA GTTTGAGAGG CATTGCCCTG TGCTTCTTCC TGGAGCCCCT
  GCAGCCTCTC CTGGTCCCAG GCAGGAAAGC AGAGAGCTAA AAGAGAGCAT AGAGGGTCCT
  GCTCTGCCAA GTCCCGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375074763	MGP_WTSI_8_71406562	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240413282					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375074763	MGP_WTSI_8_71406562	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69335315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	1039 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	within coordinates
Rr664456	regulatory region 664456	1062 bp distal
Rr664457	regulatory region 664457	561 bp distal
Rr664458	regulatory region 664458	707 bp distal
Rr664459	regulatory region 664459	within coordinates
Tssr77603	transcription start site region 77603	1991 bp downstream
Tssr77604	transcription start site region 77604	1946 bp downstream
Tssr77605	transcription start site region 77605	1933 bp downstream
Tssr77606	transcription start site region 77606	1684 bp upstream
Tssr77607	transcription start site region 77607	1750 bp upstream
Tssr77608	transcription start site region 77608	1771 bp upstream
Tssr77609	transcription start site region 77609	1806 bp upstream
Tssr77610	transcription start site region 77610	1877 bp upstream