rs240415085 SNP Detail

Summary

• ID
  rs240415085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157405735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCCCAT ACACATCAGA
  GAGGCGGGAT TCCACAGGAC TTGGATGTGA AACCCATTCC AAGGCGCGGT CTTCCTTAGC
  AGGGTAGATA CAGCTGCTGC TAAGGCCTGA AGTCAGGTCA GGTCCTGTGC CTGCCCCGTA
  GTTACTCATC TGCAGTCAGT GGCTACCTCC TTTATGGTTA GAAACTTCTG TGGTTTGCCA
  Y
  ACTAAACTCA TTGAACCTTG AGTACATATA CAACACAGGT TCCAAAGGAA GGTTGACTCT
  CCCCTTGGAG ATCTGGAGTG GGGGGCCTGA TGTCACTCTA TTGTTCCATG TTCTAACGTC
  AGCCCAAATT AGATGCCAGC TGAGTACACA AAAGCCAAAC CAGGGAGAAA GGAGTCTGGC
  TACTCTGGTC ATAGCATATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356262074	MGP_WTSI_2_157389551	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240415085					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356262074	MGP_WTSI_2_157389551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157405735 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12577	CpG island 12577	1855 bp proximal
Gm56190	predicted gene, 56190	1368 bp upstream
Nnat	neuronatin	1293 bp downstream
Rr568544	regulatory region 568544	433 bp distal
Rr568545	regulatory region 568545	1717 bp proximal
Tssr721	transcription start site region 721	1358 bp upstream
Tssr21276	transcription start site region 21276	1919 bp downstream
Tssr21277	transcription start site region 21277	1901 bp downstream
Tssr21278	transcription start site region 21278	1868 bp downstream
Tssr21279	transcription start site region 21279	1783 bp downstream
Tssr21280	transcription start site region 21280	1671 bp downstream
Tssr21281	transcription start site region 21281	1597 bp downstream
Tssr21282	transcription start site region 21282	1524 bp downstream
Tssr21283	transcription start site region 21283	1495 bp downstream
Tssr27185	transcription start site region 27185	1931 bp upstream
Tssr27186	transcription start site region 27186	1801 bp upstream