rs240422389 SNP Detail

Summary

• ID
  rs240422389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57718658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAAGAA GAAGAAAGGA
  TGGGGGCGCG AGCAGGGAGA AACTCACACC TCCCCCGCCG TTTCCTAGCG CCCATAAAAC
  ACCTTTTATT AACTCCTTCG CGTCCGGAAA GGCCCGCGTG GCCTCGCAGC CCCTGCCACG
  GTGTTTACAG CCCAGACTAA TGGGGCCCCA TATTCACCCC GATGTCGGGT GGAGGCGTCC
  R
  CCCAGGGTCT CGGTCTTCAC CCCCAGCCAC AGCCCAAGGC CTGGAGCGCC CTTCCCGCCT
  GGTCCTCAGC AGGAACAGGC CAAGATCTGA GCACGCGCAC TCAATGCCGA GTTCGGGCCG
  CGGCGCCGGT GGACCTGGGA GCCGTTGCCA GACAGGAGGC ACTCGGCTGC GTCCACACGC
  AGGAAACCGA TTGCTGGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383506423	MGP_WTSI_11_57641334	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240422389					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383506423	MGP_WTSI_11_57641334	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57718658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	within coordinates
Cpgi2911	CpG island 2911	1241 bp proximal
Hand1	heart and neural crest derivatives expressed 1	881 bp downstream
Rr447811	regulatory region 447811	75 bp distal
Rr447812	regulatory region 447812	88 bp proximal
Rr447813	regulatory region 447813	1114 bp proximal
Rr447814	regulatory region 447814	1653 bp proximal
Tssr3506	transcription start site region 3506	1438 bp downstream
Tssr108123	transcription start site region 108123	1124 bp downstream
Tssr108124	transcription start site region 108124	1185 bp downstream
Tssr108125	transcription start site region 108125	1217 bp downstream
Tssr108126	transcription start site region 108126	1403 bp downstream
Tssr108127	transcription start site region 108127	1476 bp downstream
Tssr108128	transcription start site region 108128	1483 bp downstream
Tssr108129	transcription start site region 108129	1614 bp downstream