rs240440516 SNP Detail

Summary

• ID
  rs240440516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:6098508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTACATCC AGGCCTTTGT
  CCTTGTCTTC CTCTTGGGCA AGGTGATGGG CAAGGTGTTC TTCGGGCAGC TGAGGGCAGC
  AGAGATGGAG GTAATATGTT GGTGGCCCCA AAGGACAGGG TTCAGAGGAG GGTACCCAAA
  TGATTGGTTT TCATATCATC CACTTCTCAC CCCACAGCAC CTTCTGGAAC GGTCCTGGTA
  Y
  GCTGTTACTG AGACTTGTTT GGCCTTCACC GTTTTTCGGG ATGACTTCAG CCCTCGCTTT
  GTGGCGCTCT TTACGCTGCT CCTCTTCCTC AAATGTTTCC ATTGGTTGGC TGAAGACCGT
  GTGGACTTTG TGAGTTGGGA GTGGCTGATG GGCATGCCAG TGGATTGGGG TATGGGGCAA
  CCCCAACCAT CTTGATGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401668127	MGP_WTSI_19_6048478	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240440516					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401668127	MGP_WTSI_19_6048478	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6098508 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10491	CpG island 10491			745 bp distal
D530017H19Rik	RIKEN cDNA D530017H19 gene			1049 bp upstream
Gm59262	predicted gene, 59262			1989 bp downstream
Rr370438	regulatory region 370438			1786 bp downstream
Rr543277	regulatory region 543277			1806 bp distal
Rr543279	regulatory region 543279			1467 bp distal
Rr543280	regulatory region 543280			1364 bp distal
Rr543281	regulatory region 543281			1060 bp distal
Rr543282	regulatory region 543282			1149 bp distal
Rr543283	regulatory region 543283			1086 bp distal
Rr543284	regulatory region 543284			559 bp distal
Syvn1	synovial apoptosis inhibitor 1, synoviolin			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr154539	transcription start site region 154539			1833 bp downstream
Tssr154540	transcription start site region 154540			1437 bp downstream
Tssr154541	transcription start site region 154541			1398 bp downstream
Tssr154542	transcription start site region 154542			1375 bp downstream
Tssr157817	transcription start site region 157817			1447 bp upstream
Tssr157818	transcription start site region 157818			1054 bp upstream