rs240444149 SNP Detail

Summary

• ID
  rs240444149
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:30988231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC GGACCGCCCC ACGCGCAGCC
  S
  GCCTCGGGGC CGAGTCAGAG TCCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319676966	CHEV_1_31005995	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240444149					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:30988231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi100	CpG island 100	within coordinates
Gm53209	predicted gene, 53209	721 bp upstream
Ptp4a1	protein tyrosine phosphatase 4a1	within coordinates
Rr408767	regulatory region 408767	within coordinates
Rr408768	regulatory region 408768	149 bp proximal
Rr408769	regulatory region 408769	247 bp proximal
Rr408770	regulatory region 408770	950 bp proximal
Tssr6137	transcription start site region 6137	714 bp upstream
Tssr6138	transcription start site region 6138	739 bp upstream
Tssr6139	transcription start site region 6139	1105 bp upstream
Tssr11170	transcription start site region 11170	472 bp upstream
Tssr11171	transcription start site region 11171	49 bp upstream
Tssr11172	transcription start site region 11172	147 bp downstream
Tssr11173	transcription start site region 11173	606 bp downstream
Tssr11174	transcription start site region 11174	727 bp downstream
Tssr11175	transcription start site region 11175	754 bp downstream
Tssr11176	transcription start site region 11176	867 bp downstream
Tssr11177	transcription start site region 11177	937 bp downstream
Tssr11178	transcription start site region 11178	991 bp downstream