rs240457167 SNP Detail

Summary

• ID
  rs240457167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118377482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTGTCT TCCTGGCTTA
  TGGGCCGGAG TCCGGGACCA CAGCAATGGG TGAGAGGGAA GAGCTGGAGT CGACTGAGGG
  GACAGTCCAG CTGGCTCTGG GCAAACAGGT CAGCAGAGAG CAAGCCCCCA GGCTGTGTCC
  CTGGCTCCCC ATCCTCTGAC TGGAACACAT CATCTTCTAG CTCCTCCACA CACTGAGGTG
  R
  CTCCATCTCT CCTGTCAGAG AACAATGGAA GCATCTGGGC TGCTGTCCTA CTGAGGCCAG
  ACCTAGGATT CCCCTCCCCT CCTTCCTTCC CCCCTCACCC CCCACCCCTG CTCTTCTTAT
  GTGAGGGAAC CAAGCCAACT TCTGATGATA CACAACCCTG GTAATAAAAC ACCACCAAGG
  GTGACATTCA CCCCCAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355412587	MGP_WTSI_2_118372737	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240457167					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355412587	MGP_WTSI_2_118372737	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118377482 () rs orientation: forward

Symbol	Name	Function Class
Bmf	BCL2 modifying factor	within coordinates
Cpgi12083	CpG island 12083	1895 bp proximal
Rr397207	regulatory region 397207	939 bp downstream
Rr397208	regulatory region 397208	197 bp downstream
Rr563263	regulatory region 563263	796 bp distal
Rr563264	regulatory region 563264	16 bp proximal
Rr563265	regulatory region 563265	548 bp proximal
Rr563266	regulatory region 563266	1817 bp proximal
Tssr19559	transcription start site region 19559	249 bp downstream
Tssr25777	transcription start site region 25777	1832 bp upstream
Tssr25778	transcription start site region 25778	1657 bp upstream
Tssr25779	transcription start site region 25779	17 bp downstream
Tssr25780	transcription start site region 25780	540 bp downstream