rs240459646 SNP Detail

Summary

• ID
  rs240459646
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40274547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTACTTT CAATGCCATA
  GTTTCTGATT TGCCAACACT GCCAACAGAA AGAAAATTTG TGTTGAAAAA AAAAAGTCTA
  ACTACTGATA CATTTTCTTC AAACACTTGC TTAGCTCTGT TTTTTGTTTT GTTTTGTTTT
  GTTTTTTGTT TTTTGTTTTT GTTTTTAGGA AACAACTATG AAAGAATACA GTAGAGAAAA
  M
  AGAATGACAA TAACATTTTG GGATTCCCAG CTACGTGCTC AGAGGACGGA AGGTTAACTC
  CTACTTGAGA CAGGAGCAGA CCGGGGTGAT GTGTTCCAAG CCTGTGGTCA TGAAGCTAGG
  TCTGGAAGAC AAGGATGAAC TGCACAGGCA GAGGCAAGCA ACAAAGTCAA CGATTTCCAC
  AACAAAAAAA AAAATGGTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322915576	CHEV_9_40170836	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240459646					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40274547 () rs orientation: forward

Symbol	Name	Function Class
Gm48114	predicted gene, 48114	within coordinates
Gm68184	predicted gene, 68184	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr200102	regulatory region 200102	1054 bp proximal
Rr200103	regulatory region 200103	1654 bp proximal